New to the CAZy classification? Read this first.
Attention: The CAZy GRC and GRS are coming!!! Apply now to make sure you get a spot.
...and check out the new CAZyme-specific journal, Amylase, spearheaded by CAZypedian Stefan Janecek.

Oxocarbenium ion

From CAZypedia
Jump to: navigation, search
Approve icon-50px.png
This page has been approved by the Responsible Curator as essentially complete. CAZypedia is a living document, so further improvement of this page is still possible. If you would like to suggest an addition or correction, please contact the page's Responsible Curator directly by e-mail, or using this form.

An oxocarbenium ion is the species that is formed upon formal ‘ionization’ of a glycosidic bond. Also called an oxacarbenium ion, or glycosylium ion, it is a positively charged carbocation that is stabilized by resonance.

Lifetime and involvement in enzymatic mechanisms

Lifetimes of oxocarbenium ions in water are estimated at around 10-12 sec: right at the limit of existence as free species. Further, in the presence of anionic nucleophiles their lifetime was shown to be considerably shorter [1]. Therefore it seems unlikely that oxocarbenium ion intermediates exist in the active sites of glycoside hydrolases, which contain nucleophilic carboxylate residues. Indeed there is no experimental evidence for their existence. However, kinetic isotope effect studies have shown that transition states for glycosyl transfer have considerable oxocarbenium ion character.

Oxocarbenium.png

For glycosyltransferases the situation is less clear, and there remains the possibility that an oxocarbenium ion may represent a bonafide reaction intermediate. For this to be the case the active site must effectively exclude water and must not contain nucleophilic residues in close proximity to the reactive centre.

Conformation

Because the oxocarbenium ion has double-bond character between the anomeric carbon and the ring oxygen, this part of the structure must be planar [2]. Thus for a 6-membered ring, C5, O5, C1 and C2 must lie in a plane. This arrangement can be accommodated in a 6-membered ring in the 4H3 or 3H4 half chair conformations; 4E, E4, 3E, or E3 envelope conformations; or 2,5B or B2,5 boat conformations.

Oxocarbenium conformations.png

The complete conformational pseudorotational itinerary for a pyranosyloxocarbenium ion is the same as that for cyclohexene, but with different descriptors:

... <-> 3E <-> 3H4 <-> E4 <-> 2,5B <-> E3 <-> 4H3 <-> 4E <-> B2,5 <-> 3E <-> ...

See also

References

  1. Banait, N. S., and Jencks, W. P. (1991) Journal of the American Chemical Society 113, 7951-7958. [Banait1991]
  2. Sinnott, M.L., (1990) Chemical Reviews, 90, 1171-1202. [Sinnott1990]
Personal tools
Namespaces

Variants
Actions
About CAZypedia
Content
For contributors
Tools