https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&feed=atom&action=history
Glycoside Hydrolase Family 26 - Revision history
2024-03-28T18:54:28Z
Revision history for this page on the wiki
MediaWiki 1.35.10
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Harry Brumer: Text replacement - "\^\^\^(.*)\^\^\^" to "$1"
2021-12-18T21:17:16Z
<p>Text replacement - "\^\^\^(.*)\^\^\^" to "<a href="/index.php?title=User:$1&action=edit&redlink=1" class="new" title="User:$1 (page does not exist)">$1</a>"</p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 21:17, 18 December 2021</td>
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<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [[Author]]: <del class="diffchange diffchange-inline">^^^</del>Harry Gilbert<del class="diffchange diffchange-inline">^^^</del></div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [[Author]]: <ins class="diffchange diffchange-inline">[[User:</ins>Harry Gilbert<ins class="diffchange diffchange-inline">|Harry Gilbert]]</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [[Responsible Curator]]: <del class="diffchange diffchange-inline">^^^</del>Henrik Stalbrand<del class="diffchange diffchange-inline">^^^</del></div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [[Responsible Curator]]: <ins class="diffchange diffchange-inline">[[User:</ins>Henrik Stalbrand<ins class="diffchange diffchange-inline">|Henrik Stalbrand]]</ins></div></td></tr>
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</table>
Harry Brumer
https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&diff=12565&oldid=prev
Harry Gilbert: /* Three-dimensional structures */
2018-02-19T20:07:24Z
<p><span dir="auto"><span class="autocomment">Three-dimensional structures</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:07, 19 February 2018</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Three-dimensional structures ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Three-dimensional structures ==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Three-dimensional structures are available for a large number of Family GH26 enzymes, the first solved being that of the ''Cellvibrio japonicus'' (previously called various names in the genus ''Pseudomonas'') mannanase CjMan26A <cite>Hogg2001</cite>. As members of Clan GHA they have a classical (α/β)<sub>8</sub> TIM barrel fold with the two key active site glutamic acids located at the C-terminal ends of &beta;-strands 4 (acid/base) and 7 (nucleophile). The crystal structure of two ''C. japonicus'' mannanases in complex with activated substrates with the acid base mutant <cite>Ducros2002</cite>, or substrates that are very slowly hydrolyzed in the wild type enzyme <cite>Cartmell2008</cite>, show that catalysis by this class of enzyme proceeds via a Boat<sub>2,5</sub> (''B''<sub>2,5</sub>) [[transition state]], whereas the GH26 &beta;-1,3:1,4-glucanase [[transition state]] adopts a half-chair <sup>4</sup>H<sub>3</sub> conformation <cite><del class="diffchange diffchange-inline">Money2008</del></cite>. The chemical rationale for the different [[transition state]]s adopted by &beta;-mannanases and glucanases is discussed by Davies and colleagues in these publications and elsewhere <cite>Tailford2008</cite>. The crystal structures have also revealed the mechanism of substrate recognition in subsites distal to -1 <cite>LeNours2005,Tailford2009</cite>.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Three-dimensional structures are available for a large number of Family GH26 enzymes, the first solved being that of the ''Cellvibrio japonicus'' (previously called various names in the genus ''Pseudomonas'') mannanase CjMan26A <cite>Hogg2001</cite>. As members of Clan GHA they have a classical (α/β)<sub>8</sub> TIM barrel fold with the two key active site glutamic acids located at the C-terminal ends of &beta;-strands 4 (acid/base) and 7 (nucleophile). The crystal structure of two ''C. japonicus'' mannanases in complex with activated substrates with the acid base mutant <cite>Ducros2002</cite>, or substrates that are very slowly hydrolyzed in the wild type enzyme <cite>Cartmell2008</cite>, show that catalysis by this class of enzyme proceeds via a Boat<sub>2,5</sub> (''B''<sub>2,5</sub>) [[transition state]], whereas the GH26 &beta;-1,3:1,4-glucanase [[transition state]] adopts a half-chair <sup>4</sup>H<sub>3</sub> conformation <cite><ins class="diffchange diffchange-inline">Money2006</ins></cite>. The chemical rationale for the different [[transition state]]s adopted by &beta;-mannanases and glucanases is discussed by Davies and colleagues in these publications and elsewhere <cite>Tailford2008</cite>. The crystal structures have also revealed the mechanism of substrate recognition in subsites distal to -1 <cite>LeNours2005,Tailford2009</cite>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Family Firsts ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Family Firsts ==</div></td></tr>
</table>
Harry Gilbert
https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&diff=12564&oldid=prev
Harry Gilbert: /* Family Firsts */
2018-02-19T20:06:28Z
<p><span dir="auto"><span class="autocomment">Family Firsts</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:06, 19 February 2018</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l40" >Line 40:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>;First [[catalytic nucleophile]] identification: ''Cellvibrio japonicus'' CjMan26A initially by mutagenesis and sequence conservation <cite>Bolam1996</cite> and later by X-ray crystallography <cite>Ducros2002</cite>. </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>;First [[catalytic nucleophile]] identification: ''Cellvibrio japonicus'' CjMan26A initially by mutagenesis and sequence conservation <cite>Bolam1996</cite> and later by X-ray crystallography <cite>Ducros2002</cite>. </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>;First [[general acid/base]] residue identification: ''Cellvibrio japonicus'' CjMan26A initially be mutagenesis, sequence conservation and kinetics mutant against activated substrate <cite>Bolam1996</cite>. </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>;First [[general acid/base]] residue identification: ''Cellvibrio japonicus'' CjMan26A initially be mutagenesis, sequence conservation and kinetics mutant against activated substrate <cite>Bolam1996</cite>. </div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>;First 3-D structure: ''Cellvibrio japonicus'' CjMan26A <cite><del class="diffchange diffchange-inline">Hogg2000</del></cite>.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>;First 3-D structure: ''Cellvibrio japonicus'' CjMan26A <cite><ins class="diffchange diffchange-inline">Hogg2001</ins></cite>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== References ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== References ==</div></td></tr>
</table>
Harry Gilbert
https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&diff=12563&oldid=prev
Harry Gilbert: /* Three-dimensional structures */
2018-02-19T20:06:11Z
<p><span dir="auto"><span class="autocomment">Three-dimensional structures</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:06, 19 February 2018</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l34" >Line 34:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Three-dimensional structures ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Three-dimensional structures ==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Three-dimensional structures are available for a large number of Family GH26 enzymes, the first solved being that of the ''Cellvibrio japonicus'' (previously called various names in the genus ''Pseudomonas'') mannanase CjMan26A <cite><del class="diffchange diffchange-inline">Hogg2000</del></cite>. As members of Clan GHA they have a classical (α/β)<sub>8</sub> TIM barrel fold with the two key active site glutamic acids located at the C-terminal ends of &beta;-strands 4 (acid/base) and 7 (nucleophile). The crystal structure of two ''C. japonicus'' mannanases in complex with activated substrates with the acid base mutant <cite>Ducros2002</cite>, or substrates that are very slowly hydrolyzed in the wild type enzyme <cite>Cartmell2008</cite>, show that catalysis by this class of enzyme proceeds via a Boat<sub>2,5</sub> (''B''<sub>2,5</sub>) [[transition state]], whereas the GH26 &beta;-1,3:1,4-glucanase [[transition state]] adopts a half-chair <sup>4</sup>H<sub>3</sub> conformation <cite>Money2008</cite>. The chemical rationale for the different [[transition state]]s adopted by &beta;-mannanases and glucanases is discussed by Davies and colleagues in these publications and elsewhere <cite>Tailford2008</cite>. The crystal structures have also revealed the mechanism of substrate recognition in subsites distal to -1 <cite>LeNours2005,Tailford2009</cite>.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Three-dimensional structures are available for a large number of Family GH26 enzymes, the first solved being that of the ''Cellvibrio japonicus'' (previously called various names in the genus ''Pseudomonas'') mannanase CjMan26A <cite><ins class="diffchange diffchange-inline">Hogg2001</ins></cite>. As members of Clan GHA they have a classical (α/β)<sub>8</sub> TIM barrel fold with the two key active site glutamic acids located at the C-terminal ends of &beta;-strands 4 (acid/base) and 7 (nucleophile). The crystal structure of two ''C. japonicus'' mannanases in complex with activated substrates with the acid base mutant <cite>Ducros2002</cite>, or substrates that are very slowly hydrolyzed in the wild type enzyme <cite>Cartmell2008</cite>, show that catalysis by this class of enzyme proceeds via a Boat<sub>2,5</sub> (''B''<sub>2,5</sub>) [[transition state]], whereas the GH26 &beta;-1,3:1,4-glucanase [[transition state]] adopts a half-chair <sup>4</sup>H<sub>3</sub> conformation <cite>Money2008</cite>. The chemical rationale for the different [[transition state]]s adopted by &beta;-mannanases and glucanases is discussed by Davies and colleagues in these publications and elsewhere <cite>Tailford2008</cite>. The crystal structures have also revealed the mechanism of substrate recognition in subsites distal to -1 <cite>LeNours2005,Tailford2009</cite>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Family Firsts ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Family Firsts ==</div></td></tr>
</table>
Harry Gilbert
https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&diff=12562&oldid=prev
Harry Gilbert: /* References */
2018-02-19T20:05:37Z
<p><span dir="auto"><span class="autocomment">References</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:05, 19 February 2018</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Bolam1996 pmid=8973192</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Bolam1996 pmid=8973192</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Ducros2002 pmid=12203498</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Ducros2002 pmid=12203498</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>#<del class="diffchange diffchange-inline">Hogg2000 </del>pmid=11382747</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>#<ins class="diffchange diffchange-inline">Hogg2001 </ins>pmid=11382747</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Money2006 pmid=16823793</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Money2006 pmid=16823793</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Tailford2008 pmid=18408714</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Tailford2008 pmid=18408714</div></td></tr>
</table>
Harry Gilbert
https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&diff=12561&oldid=prev
Harry Gilbert: /* References */
2018-02-19T20:05:07Z
<p><span dir="auto"><span class="autocomment">References</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:05, 19 February 2018</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l53" >Line 53:</td>
<td colspan="2" class="diff-lineno">Line 53:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Tailford2008 pmid=18408714</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Tailford2008 pmid=18408714</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#LeNours2005 pmid=16171384</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#LeNours2005 pmid=16171384</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>#<del class="diffchange diffchange-inline">1Tailford2009 </del>pmid=19441796</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>#<ins class="diffchange diffchange-inline">Tailford2009 </ins>pmid=19441796</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Gilkes1991 pmid=1886523</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Gilkes1991 pmid=1886523</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></biblio></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></biblio></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Glycoside Hydrolase Families|GH026]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Glycoside Hydrolase Families|GH026]]</div></td></tr>
</table>
Harry Gilbert
https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&diff=12560&oldid=prev
Harry Gilbert: /* Three-dimensional structures */
2018-02-19T20:03:25Z
<p><span dir="auto"><span class="autocomment">Three-dimensional structures</span></span></p>
<table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en-CA">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:03, 19 February 2018</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l34" >Line 34:</td>
<td colspan="2" class="diff-lineno">Line 34:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Three-dimensional structures ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Three-dimensional structures ==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Three-dimensional structures are available for a large number of Family GH26 enzymes, the first solved being that of the ''Cellvibrio japonicus'' (previously called various names in the genus ''Pseudomonas'') mannanase CjMan26A <cite><del class="diffchange diffchange-inline">Hogg2001</del></cite>. As members of Clan GHA they have a classical (α/β)<sub>8</sub> TIM barrel fold with the two key active site glutamic acids located at the C-terminal ends of &beta;-strands 4 (acid/base) and 7 (nucleophile). The crystal structure of two ''C. japonicus'' mannanases in complex with activated substrates with the acid base mutant <cite>Ducros2002</cite>, or substrates that are very slowly hydrolyzed in the wild type enzyme <cite>Cartmell2008</cite>, show that catalysis by this class of enzyme proceeds via a Boat<sub>2,5</sub> (''B''<sub>2,5</sub>) [[transition state]], whereas the GH26 &beta;-1,3:1,4-glucanase [[transition state]] adopts a half-chair <sup>4</sup>H<sub>3</sub> conformation <cite>Money2008</cite>. The chemical rationale for the different [[transition state]]s adopted by &beta;-mannanases and glucanases is discussed by Davies and colleagues in these publications and elsewhere <cite>Tailford2008</cite>. The crystal structures have also revealed the mechanism of substrate recognition in subsites distal to -1 <cite>LeNours2005,Tailford2009</cite>.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Three-dimensional structures are available for a large number of Family GH26 enzymes, the first solved being that of the ''Cellvibrio japonicus'' (previously called various names in the genus ''Pseudomonas'') mannanase CjMan26A <cite><ins class="diffchange diffchange-inline">Hogg2000</ins></cite>. As members of Clan GHA they have a classical (α/β)<sub>8</sub> TIM barrel fold with the two key active site glutamic acids located at the C-terminal ends of &beta;-strands 4 (acid/base) and 7 (nucleophile). The crystal structure of two ''C. japonicus'' mannanases in complex with activated substrates with the acid base mutant <cite>Ducros2002</cite>, or substrates that are very slowly hydrolyzed in the wild type enzyme <cite>Cartmell2008</cite>, show that catalysis by this class of enzyme proceeds via a Boat<sub>2,5</sub> (''B''<sub>2,5</sub>) [[transition state]], whereas the GH26 &beta;-1,3:1,4-glucanase [[transition state]] adopts a half-chair <sup>4</sup>H<sub>3</sub> conformation <cite>Money2008</cite>. The chemical rationale for the different [[transition state]]s adopted by &beta;-mannanases and glucanases is discussed by Davies and colleagues in these publications and elsewhere <cite>Tailford2008</cite>. The crystal structures have also revealed the mechanism of substrate recognition in subsites distal to -1 <cite>LeNours2005,Tailford2009</cite>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Family Firsts ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Family Firsts ==</div></td></tr>
</table>
Harry Gilbert
https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&diff=12559&oldid=prev
Harry Gilbert: /* Three-dimensional structures */
2018-02-19T20:02:30Z
<p><span dir="auto"><span class="autocomment">Three-dimensional structures</span></span></p>
<table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface">
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<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en-CA">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:02, 19 February 2018</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l34" >Line 34:</td>
<td colspan="2" class="diff-lineno">Line 34:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Three-dimensional structures ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Three-dimensional structures ==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Three-dimensional structures are available for a large number of Family GH26 enzymes, the first solved being that of the ''Cellvibrio japonicus'' (previously called various names in the genus ''Pseudomonas'') mannanase CjMan26A <cite>Hogg2001</cite>. As members of Clan GHA they have a classical (α/β)<sub>8</sub> TIM barrel fold with the two key active site glutamic acids located at the C-terminal ends of &beta;-strands 4 (acid/base) and 7 (nucleophile). The crystal structure of two ''C. japonicus'' mannanases in complex with activated substrates with the acid base mutant <cite>Ducros2002</cite>, or substrates that are very slowly hydrolyzed in the wild type enzyme <cite>Cartmell2008</cite>, show that catalysis by this class of enzyme proceeds via a Boat<sub>2,5</sub> (''B''<sub>2,5</sub>) [[transition state]], whereas the GH26 &beta;-1,3:1,4-glucanase [[transition state]] adopts a half-chair <sup>4</sup>H<sub>3</sub> conformation <cite>Money2008</cite>. The chemical rationale for the different [[transition state]]s adopted by &beta;-mannanases and glucanases is discussed by Davies and colleagues in these publications and elsewhere <cite>Tailford2008</cite>. The crystal structures have also revealed the mechanism of substrate recognition in subsites distal to -1 <cite><del class="diffchange diffchange-inline">Le Nours2005</del>,Tailford2009</cite>.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Three-dimensional structures are available for a large number of Family GH26 enzymes, the first solved being that of the ''Cellvibrio japonicus'' (previously called various names in the genus ''Pseudomonas'') mannanase CjMan26A <cite>Hogg2001</cite>. As members of Clan GHA they have a classical (α/β)<sub>8</sub> TIM barrel fold with the two key active site glutamic acids located at the C-terminal ends of &beta;-strands 4 (acid/base) and 7 (nucleophile). The crystal structure of two ''C. japonicus'' mannanases in complex with activated substrates with the acid base mutant <cite>Ducros2002</cite>, or substrates that are very slowly hydrolyzed in the wild type enzyme <cite>Cartmell2008</cite>, show that catalysis by this class of enzyme proceeds via a Boat<sub>2,5</sub> (''B''<sub>2,5</sub>) [[transition state]], whereas the GH26 &beta;-1,3:1,4-glucanase [[transition state]] adopts a half-chair <sup>4</sup>H<sub>3</sub> conformation <cite>Money2008</cite>. The chemical rationale for the different [[transition state]]s adopted by &beta;-mannanases and glucanases is discussed by Davies and colleagues in these publications and elsewhere <cite>Tailford2008</cite>. The crystal structures have also revealed the mechanism of substrate recognition in subsites distal to -1 <cite><ins class="diffchange diffchange-inline">LeNours2005</ins>,Tailford2009</cite>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Family Firsts ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Family Firsts ==</div></td></tr>
</table>
Harry Gilbert
https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&diff=12558&oldid=prev
Harry Gilbert: /* References */
2018-02-19T20:02:07Z
<p><span dir="auto"><span class="autocomment">References</span></span></p>
<table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:02, 19 February 2018</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l52" >Line 52:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Money2006 pmid=16823793</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Money2006 pmid=16823793</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Tailford2008 pmid=18408714</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Tailford2008 pmid=18408714</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>#<del class="diffchange diffchange-inline">Le Nours2005 </del>pmid=16171384</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>#<ins class="diffchange diffchange-inline">LeNours2005 </ins>pmid=16171384</div></td></tr>
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Harry Gilbert
https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_26&diff=12557&oldid=prev
Harry Gilbert: /* References */
2018-02-19T20:01:42Z
<p><span dir="auto"><span class="autocomment">References</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:01, 19 February 2018</td>
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Harry Gilbert