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	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_46&amp;diff=3921</id>
		<title>Glycoside Hydrolase Family 46</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_46&amp;diff=3921"/>
		<updated>2010-02-16T17:22:37Z</updated>

		<summary type="html">&lt;p&gt;Marie-Eve Lacombe-Harvey: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- CURATORS: Please replace the {{UnderConstruction}} tag below with {{CuratorApproved}} when the page is ready for wider public consumption --&amp;gt;&lt;br /&gt;
{{CuratorApproved}}&lt;br /&gt;
* [[Author]]: ^^^Ryszard Brzezinski^^^&lt;br /&gt;
* [[Responsible Curator]]:  ^^^Ryszard Brzezinski^^^&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- The data in the table below should be updated by the Author/Curator according to current information on the family --&amp;gt;&lt;br /&gt;
&amp;lt;div style=&amp;quot;float:right&amp;quot;&amp;gt;&lt;br /&gt;
{| {{Prettytable}} &lt;br /&gt;
|-&lt;br /&gt;
|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''Glycoside Hydrolase Family GH46'''&lt;br /&gt;
|-&lt;br /&gt;
|'''Clan'''    &lt;br /&gt;
|GH-I&lt;br /&gt;
|-&lt;br /&gt;
|'''Mechanism'''&lt;br /&gt;
|inverting&lt;br /&gt;
|-&lt;br /&gt;
|'''Active site residues'''&lt;br /&gt;
|known&lt;br /&gt;
|-&lt;br /&gt;
|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''CAZy DB link'''&lt;br /&gt;
|-&lt;br /&gt;
| colspan=&amp;quot;2&amp;quot; |http://www.cazy.org/fam/GH46.html&lt;br /&gt;
|}&lt;br /&gt;
&amp;lt;/div&amp;gt;&lt;br /&gt;
&amp;lt;!-- This is the end of the table --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Substrate specificities ==&lt;br /&gt;
[[Glycoside hydrolases]] of family 46 are essentially all ''endo''-beta-1,4-chitosanases (EC [{{EClink}}3.2.1.132 3.2.1.132]) that hydrolyze various links in chitosan, a polymer of beta-1,4-linked D-glucosamine (GlcN) units with a variable content (mostly 0 - 35%) of N-acetyl-D-glucosamine (GlcNAc) &amp;lt;cite&amp;gt;Yabuki1988 Boucher1992&amp;lt;/cite&amp;gt;. Among the four types of links occurring between these two kinds of subunits in chitosan, all the enzymes examined for their cleavage specificity acted upon the GlcN-GlcN links. In addition, the chitosanase from ''Bacillus circulans'' MH-K1 recognized also GlcN-GlcNAc links &amp;lt;cite&amp;gt;Mitsutomi1996&amp;lt;/cite&amp;gt;, while the chitosanase from ''Streptomyces'' sp. N174 recognized the GlcNAc-GlcN links &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Kinetics and Mechanism ==&lt;br /&gt;
Family GH46 enzymes utilize an [[inverting]] mechanism, as shown by NMR &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Catalytic Residues ==&lt;br /&gt;
The catalytic residues have been identified by site-directed mutagenesis and crystallography in the chitosanase from Streptomyces sp. N174. The [[general acid]] residue is Glu22 in the sequence SSA&amp;lt;u&amp;gt;'''E'''&amp;lt;/u&amp;gt;NSS, while Asp40 (DIG&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;GRG) is the [[general base]] residue &amp;lt;cite&amp;gt;Boucher1995 Marcotte1996&amp;lt;/cite&amp;gt;. The latter could activate the nucleophilic water molecule with assistance from residue Thr45 (RGY&amp;lt;u&amp;gt;'''T'''&amp;lt;/u&amp;gt;GGI) &amp;lt;cite&amp;gt;Lacombe-Harvey2009&amp;lt;/cite&amp;gt;. Analysis of sequence alignments as well as crystallographic evidence showed that the same function is played by residues Glu37 (in the sequence NKP'''&amp;lt;u&amp;gt;E&amp;lt;/u&amp;gt;'''QDD) , Asp55 (DIE&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;ERG) and Thr60 (RGY'''&amp;lt;u&amp;gt;T&amp;lt;/u&amp;gt;'''IGL) in the chitosanase from ''Bacillus circulans'' MH-K1 &amp;lt;cite&amp;gt;Saito1999&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Three-dimensional structures ==&lt;br /&gt;
[[File:csn_entire_5a.png|200px|thumb|right|3D structure of the chitosanase from ''Streptomyces'' sp. N174]] &lt;br /&gt;
Two structures have been solved using X-ray crystallography, for the chitosanases from Streptomyces sp. N174 &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt; and from Bacillus circulans MH-K1 (wild-type enzyme &amp;lt;cite&amp;gt;Saito1999&amp;lt;/cite&amp;gt; and mutant K218P &amp;lt;cite&amp;gt;Fukamizo2005&amp;lt;/cite&amp;gt;. These enzymes have essentially an alpha-helical fold, with two globular domains separated by the active site cleft for substrate binding. The cleft is bordered on the upper face by a three-stranded beta-sheet. The structure of GH46 enzymes is similar to the 3D fold of the well studied lysozyme of bacteriophage T4 of ''Escherichia coli'' belonging to family GH24 &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt; and, to some extent, to the structures of lysozymes from families GH22, GH23 as well the chitinases from family GH19 &amp;lt;cite&amp;gt;Monzingo1996&amp;lt;/cite&amp;gt;. These five families are sometimes grouped in the &amp;quot;lysozyme superfamily&amp;quot; &amp;lt;cite&amp;gt;Holm1994 Lacombe-Harvey2009&amp;lt;/cite&amp;gt;. &lt;br /&gt;
The crystal structures, completed by site-directed mutagenesis have also revealed several residues involved in substrate binding &amp;lt;cite&amp;gt;Marcotte1996 Fukamizo2005 Tremblay2001 Katsumi2005&amp;lt;/cite&amp;gt;. For the chitosanase from ''Streptomyces'' sp N174, the mode of binding of a GlcN hexasaccharide was established as being in conformity with a symmetrical 3+3 model, based on the analysis of products of hydrolysis  &amp;lt;cite&amp;gt;Tremblay2001&amp;lt;/cite&amp;gt;.  &lt;br /&gt;
&lt;br /&gt;
== Family Firsts ==&lt;br /&gt;
;First primary sequence determination: Chitosanase from ''Bacillus circulans'' MH-K1 &amp;lt;cite&amp;gt;Ando1992&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First sterochemistry determination: Chitosanase from ''Streptomyces'' sp. N174 by NMR &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First [[general base]] residue identification: Chitosanase from ''Streptomyces'' sp. N174 by sequence conservation and mutagenesis &amp;lt;cite&amp;gt;Boucher1995&amp;lt;/cite&amp;gt; and by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First [[general acid]] residue identification: Chitosanase from ''Streptomyces'' sp. N174 by sequence conservation and mutagenesis &amp;lt;cite&amp;gt;Boucher1995&amp;lt;/cite&amp;gt; and by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First 3-D structure: Chitosanase from ''Streptomyces'' sp. N174 by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;biblio&amp;gt;&lt;br /&gt;
#Yabuki1988 Yabuki, M., Uchiyama, A., Suzuki, K., Ando, A., Fujii, T. (1988) Purification and properties of chitosanase from ''Bacillus circulans'' MH-K1. Journal of General and Applied Microbiology 34:255-270.&lt;br /&gt;
#Boucher1992 Boucher, I., Dupuy, A., Vidal, P., Neugebauer, WA., Brzezinski, R. (1992) Purification and characterization of a chitosanase from ''Streptomyces'' N174. Applied Microbiology and Biotechnology 38:188-193.&lt;br /&gt;
#Mitsutomi1996 Mitsutomi, M., Ueda, M., Arai, M., Ando, A., Watanabe, T. (1996) Action patterns of microbial chitinases and chitosanases on partially ''N''-acetylated chitosan. Chitin Enzymology, vol. 2, pp 273-284.&lt;br /&gt;
#Fukamizo1995 pmid=7487871&lt;br /&gt;
#Boucher1995 pmid=8537367&lt;br /&gt;
#Lacombe-Harvey2009 pmid=19143844&lt;br /&gt;
#Saito1999 pmid=10521473&lt;br /&gt;
#Marcotte1996 pmid=8564542&lt;br /&gt;
#Fukamizo2005 pmid=16272568&lt;br /&gt;
#Monzingo1996 pmid=8564539&lt;br /&gt;
#Holm1994 pmid=8119396&lt;br /&gt;
#Tremblay2001 pmid=11686931&lt;br /&gt;
#Katsumi2005 pmid=16288718&lt;br /&gt;
#Ando1992 Ando, A., Noguchi, K., Yanagi, M., Shinoyama, H., Kagawa, Y., Hirata, H., Yabuki, M., Fujii, T. (1992) Primary structure of chitosanase produced by ''Bacillus circulans'' MH-K1. Journal of General and Applied Microbiology 38:135-144.&lt;br /&gt;
&amp;lt;/biblio&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Category:Glycoside Hydrolase Families|GH046]]&lt;/div&gt;</summary>
		<author><name>Marie-Eve Lacombe-Harvey</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=File:Csn_entire_5a.png&amp;diff=3920</id>
		<title>File:Csn entire 5a.png</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=File:Csn_entire_5a.png&amp;diff=3920"/>
		<updated>2010-02-16T17:18:36Z</updated>

		<summary type="html">&lt;p&gt;Marie-Eve Lacombe-Harvey: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Marie-Eve Lacombe-Harvey</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=File:Csn_entire_5.png&amp;diff=3919</id>
		<title>File:Csn entire 5.png</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=File:Csn_entire_5.png&amp;diff=3919"/>
		<updated>2010-02-16T17:17:05Z</updated>

		<summary type="html">&lt;p&gt;Marie-Eve Lacombe-Harvey: uploaded a new version of &amp;quot;File:Csn entire 5.png&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Csn N174&lt;/div&gt;</summary>
		<author><name>Marie-Eve Lacombe-Harvey</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_46&amp;diff=3908</id>
		<title>Glycoside Hydrolase Family 46</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_46&amp;diff=3908"/>
		<updated>2010-02-16T16:52:33Z</updated>

		<summary type="html">&lt;p&gt;Marie-Eve Lacombe-Harvey: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- CURATORS: Please replace the {{UnderConstruction}} tag below with {{CuratorApproved}} when the page is ready for wider public consumption --&amp;gt;&lt;br /&gt;
{{CuratorApproved}}&lt;br /&gt;
* [[Author]]: ^^^Ryszard Brzezinski^^^&lt;br /&gt;
* [[Responsible Curator]]:  ^^^Ryszard Brzezinski^^^&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- The data in the table below should be updated by the Author/Curator according to current information on the family --&amp;gt;&lt;br /&gt;
&amp;lt;div style=&amp;quot;float:right&amp;quot;&amp;gt;&lt;br /&gt;
{| {{Prettytable}} &lt;br /&gt;
|-&lt;br /&gt;
|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''Glycoside Hydrolase Family GH46'''&lt;br /&gt;
|-&lt;br /&gt;
|'''Clan'''    &lt;br /&gt;
|GH-I&lt;br /&gt;
|-&lt;br /&gt;
|'''Mechanism'''&lt;br /&gt;
|inverting&lt;br /&gt;
|-&lt;br /&gt;
|'''Active site residues'''&lt;br /&gt;
|known&lt;br /&gt;
|-&lt;br /&gt;
|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''CAZy DB link'''&lt;br /&gt;
|-&lt;br /&gt;
| colspan=&amp;quot;2&amp;quot; |http://www.cazy.org/fam/GH46.html&lt;br /&gt;
|}&lt;br /&gt;
&amp;lt;/div&amp;gt;&lt;br /&gt;
&amp;lt;!-- This is the end of the table --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Substrate specificities ==&lt;br /&gt;
[[Glycoside hydrolases]] of family 46 are essentially all ''endo''-beta-1,4-chitosanases (EC [{{EClink}}3.2.1.132 3.2.1.132]) that hydrolyze various links in chitosan, a polymer of beta-1,4-linked D-glucosamine (GlcN) units with a variable content (mostly 0 - 35%) of N-acetyl-D-glucosamine (GlcNAc) &amp;lt;cite&amp;gt;Yabuki1988 Boucher1992&amp;lt;/cite&amp;gt;. Among the four types of links occurring between these two kinds of subunits in chitosan, all the enzymes examined for their cleavage specificity acted upon the GlcN-GlcN links. In addition, the chitosanase from ''Bacillus circulans'' MH-K1 recognized also GlcN-GlcNAc links &amp;lt;cite&amp;gt;Mitsutomi1996&amp;lt;/cite&amp;gt;, while the chitosanase from ''Streptomyces'' sp. N174 recognized the GlcNAc-GlcN links &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Kinetics and Mechanism ==&lt;br /&gt;
Family GH46 enzymes utilize an [[inverting]] mechanism, as shown by NMR &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Catalytic Residues ==&lt;br /&gt;
The catalytic residues have been identified by site-directed mutagenesis and crystallography in the chitosanase from Streptomyces sp. N174. The [[general acid]] residue is Glu22 in the sequence SSA&amp;lt;u&amp;gt;'''E'''&amp;lt;/u&amp;gt;NSS, while Asp40 (DIG&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;GRG) is the [[general base]] residue &amp;lt;cite&amp;gt;Boucher1995 Marcotte1996&amp;lt;/cite&amp;gt;. The latter could activate the nucleophilic water molecule with assistance from residue Thr45 (RGY&amp;lt;u&amp;gt;'''T'''&amp;lt;/u&amp;gt;GGI) &amp;lt;cite&amp;gt;Lacombe-Harvey2009&amp;lt;/cite&amp;gt;. Analysis of sequence alignments as well as crystallographic evidence showed that the same function is played by residues Glu37 (in the sequence NKP'''&amp;lt;u&amp;gt;E&amp;lt;/u&amp;gt;'''QDD) , Asp55 (DIE&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;ERG) and Thr60 (RGY'''&amp;lt;u&amp;gt;T&amp;lt;/u&amp;gt;'''IGL) in the chitosanase from ''Bacillus circulans'' MH-K1 &amp;lt;cite&amp;gt;Saito1999&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Three-dimensional structures ==&lt;br /&gt;
[[File:csn_entire_5.png|200px|thumb|right|3D structure]] &lt;br /&gt;
Two structures have been solved using X-ray crystallography, for the chitosanases from Streptomyces sp. N174 &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt; and from Bacillus circulans MH-K1 (wild-type enzyme &amp;lt;cite&amp;gt;Saito1999&amp;lt;/cite&amp;gt; and mutant K218P &amp;lt;cite&amp;gt;Fukamizo2005&amp;lt;/cite&amp;gt;. These enzymes have essentially an alpha-helical fold, with two globular domains separated by the active site cleft for substrate binding. The cleft is bordered on the upper face by a three-stranded beta-sheet. The structure of GH46 enzymes is similar to the 3D fold of the well studied lysozyme of bacteriophage T4 of ''Escherichia coli'' belonging to family GH24 &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt; and, to some extent, to the structures of lysozymes from families GH22, GH23 as well the chitinases from family GH19 &amp;lt;cite&amp;gt;Monzingo1996&amp;lt;/cite&amp;gt;. These five families are sometimes grouped in the &amp;quot;lysozyme superfamily&amp;quot; &amp;lt;cite&amp;gt;Holm1994 Lacombe-Harvey2009&amp;lt;/cite&amp;gt;. &lt;br /&gt;
The crystal structures, completed by site-directed mutagenesis have also revealed several residues involved in substrate binding &amp;lt;cite&amp;gt;Marcotte1996 Fukamizo2005 Tremblay2001 Katsumi2005&amp;lt;/cite&amp;gt;. For the chitosanase from ''Streptomyces'' sp N174, the mode of binding of a GlcN hexasaccharide was established as being in conformity with a symmetrical 3+3 model, based on the analysis of products of hydrolysis  &amp;lt;cite&amp;gt;Tremblay2001&amp;lt;/cite&amp;gt;.  &lt;br /&gt;
&lt;br /&gt;
== Family Firsts ==&lt;br /&gt;
;First primary sequence determination: Chitosanase from ''Bacillus circulans'' MH-K1 &amp;lt;cite&amp;gt;Ando1992&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First sterochemistry determination: Chitosanase from ''Streptomyces'' sp. N174 by NMR &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First [[general base]] residue identification: Chitosanase from ''Streptomyces'' sp. N174 by sequence conservation and mutagenesis &amp;lt;cite&amp;gt;Boucher1995&amp;lt;/cite&amp;gt; and by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First [[general acid]] residue identification: Chitosanase from ''Streptomyces'' sp. N174 by sequence conservation and mutagenesis &amp;lt;cite&amp;gt;Boucher1995&amp;lt;/cite&amp;gt; and by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First 3-D structure: Chitosanase from ''Streptomyces'' sp. N174 by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;biblio&amp;gt;&lt;br /&gt;
#Yabuki1988 Yabuki, M., Uchiyama, A., Suzuki, K., Ando, A., Fujii, T. (1988) Purification and properties of chitosanase from ''Bacillus circulans'' MH-K1. Journal of General and Applied Microbiology 34:255-270.&lt;br /&gt;
#Boucher1992 Boucher, I., Dupuy, A., Vidal, P., Neugebauer, WA., Brzezinski, R. (1992) Purification and characterization of a chitosanase from ''Streptomyces'' N174. Applied Microbiology and Biotechnology 38:188-193.&lt;br /&gt;
#Mitsutomi1996 Mitsutomi, M., Ueda, M., Arai, M., Ando, A., Watanabe, T. (1996) Action patterns of microbial chitinases and chitosanases on partially ''N''-acetylated chitosan. Chitin Enzymology, vol. 2, pp 273-284.&lt;br /&gt;
#Fukamizo1995 pmid=7487871&lt;br /&gt;
#Boucher1995 pmid=8537367&lt;br /&gt;
#Lacombe-Harvey2009 pmid=19143844&lt;br /&gt;
#Saito1999 pmid=10521473&lt;br /&gt;
#Marcotte1996 pmid=8564542&lt;br /&gt;
#Fukamizo2005 pmid=16272568&lt;br /&gt;
#Monzingo1996 pmid=8564539&lt;br /&gt;
#Holm1994 pmid=8119396&lt;br /&gt;
#Tremblay2001 pmid=11686931&lt;br /&gt;
#Katsumi2005 pmid=16288718&lt;br /&gt;
#Ando1992 Ando, A., Noguchi, K., Yanagi, M., Shinoyama, H., Kagawa, Y., Hirata, H., Yabuki, M., Fujii, T. (1992) Primary structure of chitosanase produced by ''Bacillus circulans'' MH-K1. Journal of General and Applied Microbiology 38:135-144.&lt;br /&gt;
&amp;lt;/biblio&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Category:Glycoside Hydrolase Families|GH046]]&lt;/div&gt;</summary>
		<author><name>Marie-Eve Lacombe-Harvey</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_46&amp;diff=3907</id>
		<title>Glycoside Hydrolase Family 46</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_46&amp;diff=3907"/>
		<updated>2010-02-16T16:51:48Z</updated>

		<summary type="html">&lt;p&gt;Marie-Eve Lacombe-Harvey: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- CURATORS: Please replace the {{UnderConstruction}} tag below with {{CuratorApproved}} when the page is ready for wider public consumption --&amp;gt;&lt;br /&gt;
{{CuratorApproved}}&lt;br /&gt;
* [[Author]]: ^^^Ryszard Brzezinski^^^&lt;br /&gt;
* [[Responsible Curator]]:  ^^^Ryszard Brzezinski^^^&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- The data in the table below should be updated by the Author/Curator according to current information on the family --&amp;gt;&lt;br /&gt;
&amp;lt;div style=&amp;quot;float:right&amp;quot;&amp;gt;&lt;br /&gt;
{| {{Prettytable}} &lt;br /&gt;
|-&lt;br /&gt;
|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''Glycoside Hydrolase Family GH46'''&lt;br /&gt;
|-&lt;br /&gt;
|'''Clan'''    &lt;br /&gt;
|GH-I&lt;br /&gt;
|-&lt;br /&gt;
|'''Mechanism'''&lt;br /&gt;
|inverting&lt;br /&gt;
|-&lt;br /&gt;
|'''Active site residues'''&lt;br /&gt;
|known&lt;br /&gt;
|-&lt;br /&gt;
|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''CAZy DB link'''&lt;br /&gt;
|-&lt;br /&gt;
| colspan=&amp;quot;2&amp;quot; |http://www.cazy.org/fam/GH46.html&lt;br /&gt;
|}&lt;br /&gt;
&amp;lt;/div&amp;gt;&lt;br /&gt;
&amp;lt;!-- This is the end of the table --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Substrate specificities ==&lt;br /&gt;
[[Glycoside hydrolases]] of family 46 are essentially all ''endo''-beta-1,4-chitosanases (EC [{{EClink}}3.2.1.132 3.2.1.132]) that hydrolyze various links in chitosan, a polymer of beta-1,4-linked D-glucosamine (GlcN) units with a variable content (mostly 0 - 35%) of N-acetyl-D-glucosamine (GlcNAc) &amp;lt;cite&amp;gt;Yabuki1988 Boucher1992&amp;lt;/cite&amp;gt;. Among the four types of links occurring between these two kinds of subunits in chitosan, all the enzymes examined for their cleavage specificity acted upon the GlcN-GlcN links. In addition, the chitosanase from ''Bacillus circulans'' MH-K1 recognized also GlcN-GlcNAc links &amp;lt;cite&amp;gt;Mitsutomi1996&amp;lt;/cite&amp;gt;, while the chitosanase from ''Streptomyces'' sp. N174 recognized the GlcNAc-GlcN links &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Kinetics and Mechanism ==&lt;br /&gt;
Family GH46 enzymes utilize an [[inverting]] mechanism, as shown by NMR &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Catalytic Residues ==&lt;br /&gt;
The catalytic residues have been identified by site-directed mutagenesis and crystallography in the chitosanase from Streptomyces sp. N174. The [[general acid]] residue is Glu22 in the sequence SSA&amp;lt;u&amp;gt;'''E'''&amp;lt;/u&amp;gt;NSS, while Asp40 (DIG&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;GRG) is the [[general base]] residue &amp;lt;cite&amp;gt;Boucher1995 Marcotte1996&amp;lt;/cite&amp;gt;. The latter could activate the nucleophilic water molecule with assistance from residue Thr45 (RGY&amp;lt;u&amp;gt;'''T'''&amp;lt;/u&amp;gt;GGI) &amp;lt;cite&amp;gt;Lacombe-Harvey2009&amp;lt;/cite&amp;gt;. Analysis of sequence alignments as well as crystallographic evidence showed that the same function is played by residues Glu37 (in the sequence NKP'''&amp;lt;u&amp;gt;E&amp;lt;/u&amp;gt;'''QDD) , Asp55 (DIE&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;ERG) and Thr60 (RGY'''&amp;lt;u&amp;gt;T&amp;lt;/u&amp;gt;'''IGL) in the chitosanase from ''Bacillus circulans'' MH-K1 &amp;lt;cite&amp;gt;Saito1999&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Three-dimensional structures ==&lt;br /&gt;
Two structures have been solved using X-ray crystallography, for the chitosanases from Streptomyces sp. N174 &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt; and from Bacillus circulans MH-K1 (wild-type enzyme &amp;lt;cite&amp;gt;Saito1999&amp;lt;/cite&amp;gt; and mutant K218P &amp;lt;cite&amp;gt;Fukamizo2005&amp;lt;/cite&amp;gt;. These enzymes have essentially an alpha-helical fold, with two globular domains separated by the active site cleft for substrate binding. The cleft is bordered on the upper face by a three-stranded beta-sheet. The structure of GH46 enzymes is similar to the 3D fold of the well studied lysozyme of bacteriophage T4 of ''Escherichia coli'' belonging to family GH24 &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt; and, to some extent, to the structures of lysozymes from families GH22, GH23 as well the chitinases from family GH19 &amp;lt;cite&amp;gt;Monzingo1996&amp;lt;/cite&amp;gt;. These five families are sometimes grouped in the &amp;quot;lysozyme superfamily&amp;quot; &amp;lt;cite&amp;gt;Holm1994 Lacombe-Harvey2009&amp;lt;/cite&amp;gt;. &lt;br /&gt;
The crystal structures, completed by site-directed mutagenesis have also revealed several residues involved in substrate binding &amp;lt;cite&amp;gt;Marcotte1996 Fukamizo2005 Tremblay2001 Katsumi2005&amp;lt;/cite&amp;gt;. For the chitosanase from ''Streptomyces'' sp N174, the mode of binding of a GlcN hexasaccharide was established as being in conformity with a symmetrical 3+3 model, based on the analysis of products of hydrolysis  &amp;lt;cite&amp;gt;Tremblay2001&amp;lt;/cite&amp;gt;.  &lt;br /&gt;
[[File:csn_entire_5.png|200px|thumb|right|3D structure]] &lt;br /&gt;
== Family Firsts ==&lt;br /&gt;
;First primary sequence determination: Chitosanase from ''Bacillus circulans'' MH-K1 &amp;lt;cite&amp;gt;Ando1992&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First sterochemistry determination: Chitosanase from ''Streptomyces'' sp. N174 by NMR &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First [[general base]] residue identification: Chitosanase from ''Streptomyces'' sp. N174 by sequence conservation and mutagenesis &amp;lt;cite&amp;gt;Boucher1995&amp;lt;/cite&amp;gt; and by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First [[general acid]] residue identification: Chitosanase from ''Streptomyces'' sp. N174 by sequence conservation and mutagenesis &amp;lt;cite&amp;gt;Boucher1995&amp;lt;/cite&amp;gt; and by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First 3-D structure: Chitosanase from ''Streptomyces'' sp. N174 by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;biblio&amp;gt;&lt;br /&gt;
#Yabuki1988 Yabuki, M., Uchiyama, A., Suzuki, K., Ando, A., Fujii, T. (1988) Purification and properties of chitosanase from ''Bacillus circulans'' MH-K1. Journal of General and Applied Microbiology 34:255-270.&lt;br /&gt;
#Boucher1992 Boucher, I., Dupuy, A., Vidal, P., Neugebauer, WA., Brzezinski, R. (1992) Purification and characterization of a chitosanase from ''Streptomyces'' N174. Applied Microbiology and Biotechnology 38:188-193.&lt;br /&gt;
#Mitsutomi1996 Mitsutomi, M., Ueda, M., Arai, M., Ando, A., Watanabe, T. (1996) Action patterns of microbial chitinases and chitosanases on partially ''N''-acetylated chitosan. Chitin Enzymology, vol. 2, pp 273-284.&lt;br /&gt;
#Fukamizo1995 pmid=7487871&lt;br /&gt;
#Boucher1995 pmid=8537367&lt;br /&gt;
#Lacombe-Harvey2009 pmid=19143844&lt;br /&gt;
#Saito1999 pmid=10521473&lt;br /&gt;
#Marcotte1996 pmid=8564542&lt;br /&gt;
#Fukamizo2005 pmid=16272568&lt;br /&gt;
#Monzingo1996 pmid=8564539&lt;br /&gt;
#Holm1994 pmid=8119396&lt;br /&gt;
#Tremblay2001 pmid=11686931&lt;br /&gt;
#Katsumi2005 pmid=16288718&lt;br /&gt;
#Ando1992 Ando, A., Noguchi, K., Yanagi, M., Shinoyama, H., Kagawa, Y., Hirata, H., Yabuki, M., Fujii, T. (1992) Primary structure of chitosanase produced by ''Bacillus circulans'' MH-K1. Journal of General and Applied Microbiology 38:135-144.&lt;br /&gt;
&amp;lt;/biblio&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Category:Glycoside Hydrolase Families|GH046]]&lt;/div&gt;</summary>
		<author><name>Marie-Eve Lacombe-Harvey</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_46&amp;diff=3906</id>
		<title>Glycoside Hydrolase Family 46</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_46&amp;diff=3906"/>
		<updated>2010-02-16T16:50:08Z</updated>

		<summary type="html">&lt;p&gt;Marie-Eve Lacombe-Harvey: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- CURATORS: Please replace the {{UnderConstruction}} tag below with {{CuratorApproved}} when the page is ready for wider public consumption --&amp;gt;&lt;br /&gt;
{{CuratorApproved}}&lt;br /&gt;
* [[Author]]: ^^^Ryszard Brzezinski^^^&lt;br /&gt;
* [[Responsible Curator]]:  ^^^Ryszard Brzezinski^^^&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- The data in the table below should be updated by the Author/Curator according to current information on the family --&amp;gt;&lt;br /&gt;
&amp;lt;div style=&amp;quot;float:right&amp;quot;&amp;gt;&lt;br /&gt;
{| {{Prettytable}} &lt;br /&gt;
|-&lt;br /&gt;
|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''Glycoside Hydrolase Family GH46'''&lt;br /&gt;
|-&lt;br /&gt;
|'''Clan'''    &lt;br /&gt;
|GH-I&lt;br /&gt;
|-&lt;br /&gt;
|'''Mechanism'''&lt;br /&gt;
|inverting&lt;br /&gt;
|-&lt;br /&gt;
|'''Active site residues'''&lt;br /&gt;
|known&lt;br /&gt;
|-&lt;br /&gt;
|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''CAZy DB link'''&lt;br /&gt;
|-&lt;br /&gt;
| colspan=&amp;quot;2&amp;quot; |http://www.cazy.org/fam/GH46.html&lt;br /&gt;
|}&lt;br /&gt;
&amp;lt;/div&amp;gt;&lt;br /&gt;
&amp;lt;!-- This is the end of the table --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Substrate specificities ==&lt;br /&gt;
[[Glycoside hydrolases]] of family 46 are essentially all ''endo''-beta-1,4-chitosanases (EC [{{EClink}}3.2.1.132 3.2.1.132]) that hydrolyze various links in chitosan, a polymer of beta-1,4-linked D-glucosamine (GlcN) units with a variable content (mostly 0 - 35%) of N-acetyl-D-glucosamine (GlcNAc) &amp;lt;cite&amp;gt;Yabuki1988 Boucher1992&amp;lt;/cite&amp;gt;. Among the four types of links occurring between these two kinds of subunits in chitosan, all the enzymes examined for their cleavage specificity acted upon the GlcN-GlcN links. In addition, the chitosanase from ''Bacillus circulans'' MH-K1 recognized also GlcN-GlcNAc links &amp;lt;cite&amp;gt;Mitsutomi1996&amp;lt;/cite&amp;gt;, while the chitosanase from ''Streptomyces'' sp. N174 recognized the GlcNAc-GlcN links &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Kinetics and Mechanism ==&lt;br /&gt;
Family GH46 enzymes utilize an [[inverting]] mechanism, as shown by NMR &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Catalytic Residues ==&lt;br /&gt;
The catalytic residues have been identified by site-directed mutagenesis and crystallography in the chitosanase from Streptomyces sp. N174. The [[general acid]] residue is Glu22 in the sequence SSA&amp;lt;u&amp;gt;'''E'''&amp;lt;/u&amp;gt;NSS, while Asp40 (DIG&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;GRG) is the [[general base]] residue &amp;lt;cite&amp;gt;Boucher1995 Marcotte1996&amp;lt;/cite&amp;gt;. The latter could activate the nucleophilic water molecule with assistance from residue Thr45 (RGY&amp;lt;u&amp;gt;'''T'''&amp;lt;/u&amp;gt;GGI) &amp;lt;cite&amp;gt;Lacombe-Harvey2009&amp;lt;/cite&amp;gt;. Analysis of sequence alignments as well as crystallographic evidence showed that the same function is played by residues Glu37 (in the sequence NKP'''&amp;lt;u&amp;gt;E&amp;lt;/u&amp;gt;'''QDD) , Asp55 (DIE&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;ERG) and Thr60 (RGY'''&amp;lt;u&amp;gt;T&amp;lt;/u&amp;gt;'''IGL) in the chitosanase from ''Bacillus circulans'' MH-K1 &amp;lt;cite&amp;gt;Saito1999&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Three-dimensional structures ==&lt;br /&gt;
Two structures have been solved using X-ray crystallography, for the chitosanases from Streptomyces sp. N174 &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt; and from Bacillus circulans MH-K1 (wild-type enzyme &amp;lt;cite&amp;gt;Saito1999&amp;lt;/cite&amp;gt; and mutant K218P &amp;lt;cite&amp;gt;Fukamizo2005&amp;lt;/cite&amp;gt;. These enzymes have essentially an alpha-helical fold, with two globular domains separated by the active site cleft for substrate binding. The cleft is bordered on the upper face by a three-stranded beta-sheet. The structure of GH46 enzymes is similar to the 3D fold of the well studied lysozyme of bacteriophage T4 of ''Escherichia coli'' belonging to family GH24 &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt; and, to some extent, to the structures of lysozymes from families GH22, GH23 as well the chitinases from family GH19 &amp;lt;cite&amp;gt;Monzingo1996&amp;lt;/cite&amp;gt;. These five families are sometimes grouped in the &amp;quot;lysozyme superfamily&amp;quot; &amp;lt;cite&amp;gt;Holm1994 Lacombe-Harvey2009&amp;lt;/cite&amp;gt;. &lt;br /&gt;
The crystal structures, completed by site-directed mutagenesis have also revealed several residues involved in substrate binding &amp;lt;cite&amp;gt;Marcotte1996 Fukamizo2005 Tremblay2001 Katsumi2005&amp;lt;/cite&amp;gt;. For the chitosanase from ''Streptomyces'' sp N174, the mode of binding of a GlcN hexasaccharide was established as being in conformity with a symmetrical 3+3 model, based on the analysis of products of hydrolysis  &amp;lt;cite&amp;gt;Tremblay2001&amp;lt;/cite&amp;gt;.  &lt;br /&gt;
[[File:csn_entire_5.png|200px|thumb|left|alt text]] &lt;br /&gt;
== Family Firsts ==&lt;br /&gt;
;First primary sequence determination: Chitosanase from ''Bacillus circulans'' MH-K1 &amp;lt;cite&amp;gt;Ando1992&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First sterochemistry determination: Chitosanase from ''Streptomyces'' sp. N174 by NMR &amp;lt;cite&amp;gt;Fukamizo1995&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First [[general base]] residue identification: Chitosanase from ''Streptomyces'' sp. N174 by sequence conservation and mutagenesis &amp;lt;cite&amp;gt;Boucher1995&amp;lt;/cite&amp;gt; and by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First [[general acid]] residue identification: Chitosanase from ''Streptomyces'' sp. N174 by sequence conservation and mutagenesis &amp;lt;cite&amp;gt;Boucher1995&amp;lt;/cite&amp;gt; and by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
;First 3-D structure: Chitosanase from ''Streptomyces'' sp. N174 by X-ray crystallography &amp;lt;cite&amp;gt;Marcotte1996&amp;lt;/cite&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;biblio&amp;gt;&lt;br /&gt;
#Yabuki1988 Yabuki, M., Uchiyama, A., Suzuki, K., Ando, A., Fujii, T. (1988) Purification and properties of chitosanase from ''Bacillus circulans'' MH-K1. Journal of General and Applied Microbiology 34:255-270.&lt;br /&gt;
#Boucher1992 Boucher, I., Dupuy, A., Vidal, P., Neugebauer, WA., Brzezinski, R. (1992) Purification and characterization of a chitosanase from ''Streptomyces'' N174. Applied Microbiology and Biotechnology 38:188-193.&lt;br /&gt;
#Mitsutomi1996 Mitsutomi, M., Ueda, M., Arai, M., Ando, A., Watanabe, T. (1996) Action patterns of microbial chitinases and chitosanases on partially ''N''-acetylated chitosan. Chitin Enzymology, vol. 2, pp 273-284.&lt;br /&gt;
#Fukamizo1995 pmid=7487871&lt;br /&gt;
#Boucher1995 pmid=8537367&lt;br /&gt;
#Lacombe-Harvey2009 pmid=19143844&lt;br /&gt;
#Saito1999 pmid=10521473&lt;br /&gt;
#Marcotte1996 pmid=8564542&lt;br /&gt;
#Fukamizo2005 pmid=16272568&lt;br /&gt;
#Monzingo1996 pmid=8564539&lt;br /&gt;
#Holm1994 pmid=8119396&lt;br /&gt;
#Tremblay2001 pmid=11686931&lt;br /&gt;
#Katsumi2005 pmid=16288718&lt;br /&gt;
#Ando1992 Ando, A., Noguchi, K., Yanagi, M., Shinoyama, H., Kagawa, Y., Hirata, H., Yabuki, M., Fujii, T. (1992) Primary structure of chitosanase produced by ''Bacillus circulans'' MH-K1. Journal of General and Applied Microbiology 38:135-144.&lt;br /&gt;
&amp;lt;/biblio&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Category:Glycoside Hydrolase Families|GH046]]&lt;/div&gt;</summary>
		<author><name>Marie-Eve Lacombe-Harvey</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=File:Csn_entire_5.png&amp;diff=3901</id>
		<title>File:Csn entire 5.png</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=File:Csn_entire_5.png&amp;diff=3901"/>
		<updated>2010-02-16T16:43:54Z</updated>

		<summary type="html">&lt;p&gt;Marie-Eve Lacombe-Harvey: Csn N174&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Csn N174&lt;/div&gt;</summary>
		<author><name>Marie-Eve Lacombe-Harvey</name></author>
	</entry>
</feed>