CAZypedia:History - Revision history

Harry Brumer at 13:22, 10 January 2025

2025-01-10T13:22:51Z

Harry Brumer at 13:21, 10 January 2025

2025-01-10T13:21:51Z

Harry Brumer at 00:52, 6 February 2024

2024-02-06T00:52:53Z

Harry Brumer at 20:52, 18 December 2021

2021-12-18T20:52:08Z

Harry Brumer at 20:51, 18 December 2021

2021-12-18T20:51:27Z

Harry Brumer at 20:50, 18 December 2021

2021-12-18T20:50:42Z

Harry Brumer: Text replacement - "User:Alisdair Boraston" to "User:Al Boraston"

2021-12-18T20:47:55Z

Text replacement - "User:Alisdair Boraston" to "User:Al Boraston"

Harry Brumer: Text replacement - "\^\^\^(.*)\^\^\^" to "$1"

2021-12-18T20:45:07Z

Text replacement - "\^\^\^(.*)\^\^\^" to "$1"

Harry Brumer at 19:44, 4 February 2019

2019-02-04T19:44:53Z

Harry Brumer at 18:36, 4 February 2019

2019-02-04T18:36:44Z

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-;July 2006: The idea to produce a comprehesive encyclopedia of carbohydrate-active enzymes as a printed volume is raised by [[Bruce Stone|Prof. Bruce Stone]] at the [http://www.internationalcarbohydrateorganisation.org/content/past-symposia XXIIIrd International Carbohydrate Symposium] in Whistler, Canada (July 23-28).  Among others, [[User:Steve Withers|Steve Withers]], [[User:Gideon Davies|Gideon Davies]], [[User:Birte Svensson|Birte Svensson]], [[User:Bernard Henrissat|Bernard Henrissat]],  [[User:Spencer Williams|Spencer Williams]], [[User:David Vocadlo|David Vocadlo]], and [[User:Harry Brumer|Harry Brumer]] were involved in this informal discussion.
+;July 2006: The idea to produce a comprehesive encyclopedia of carbohydrate-active enzymes as a printed volume is raised by [[Bruce Stone|Prof. Bruce Stone]] at the [http://www.internationalcarbohydrateorganisation.org/content/past-symposia XXIIIrd International Carbohydrate Symposium] in Whistler, Canada (July 23-28).  Among others, [[User:Steve Withers|Steve Withers]], [[User:Gideon Davies|Gideon Davies]], [[User:Birte Svensson|Birte Svensson]], [[User:Bernard Henrissat|Bernard Henrissat]],  [[User:Anthony Clarke|Anthony Clarke]], [[User:Spencer Williams|Spencer Williams]], [[User:David Vocadlo|David Vocadlo]], and [[User:Harry Brumer|Harry Brumer]] were involved in this informal discussion.
 ;April 2007: In a group discussion at the [http://dx.doi.org/10.1080/10242420701806736 7th Carbohydrate Bioengineering Meeting], held in Braunschweig, Germany (April 22-25), the suggestion was put forward that [[Bruce Stone|Bruce's]] encyclopedia might be better served online, due to the rapid nature of developments in the field.  "''CAZypedia''" was suggested as a dynamic, wiki-based solution to this issue.

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-;July 2006: The idea to produce a comprehesive encyclopedia of carbohydrate-active enzymes as a printed volume is raised by [[Bruce Stone|Prof. Bruce Stone]] at the [http://www.internationalcarbohydrateorganisation.org/content/past-symposia XXIIIrd International Carbohydrate Symposium] in Whistler, Canada (July 23-28).  Among others, [[User:Steve Withers|Steve Withers]], [[User:Gideon Davies|Gideon Davies]], [[User:David Vocadlo|David Vocadlo]], and [[User:Harry Brumer|Harry Brumer]] were involved in this informal discussion.
+;July 2006: The idea to produce a comprehesive encyclopedia of carbohydrate-active enzymes as a printed volume is raised by [[Bruce Stone|Prof. Bruce Stone]] at the [http://www.internationalcarbohydrateorganisation.org/content/past-symposia XXIIIrd International Carbohydrate Symposium] in Whistler, Canada (July 23-28).  Among others, [[User:Steve Withers|Steve Withers]], [[User:Gideon Davies|Gideon Davies]], [[User:Birte Svensson|Birte Svensson]], [[User:Bernard Henrissat|Bernard Henrissat]],  [[User:Spencer Williams|Spencer Williams]], [[User:David Vocadlo|David Vocadlo]], and [[User:Harry Brumer|Harry Brumer]] were involved in this informal discussion.
 ;April 2007: In a group discussion at the [http://dx.doi.org/10.1080/10242420701806736 7th Carbohydrate Bioengineering Meeting], held in Braunschweig, Germany (April 22-25), the suggestion was put forward that [[Bruce Stone|Bruce's]] encyclopedia might be better served online, due to the rapid nature of developments in the field.  "''CAZypedia''" was suggested as a dynamic, wiki-based solution to this issue.

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 ;27 October 2011: ''CAZypedia'' is presented by Senior Curator [[User:Harry Brumer|Harry Brumer]] as part of a series of talks for [http://scholcomm.ubc.ca/events/oaweek/ Open Access Week at the University of British Columbia].  This is the first presentation of ''CAZypedia'' for a wider, non-specialist audience.  A video recording of this presentation, which includes a discussion of ''CAZypedia's'' genesis and evolution, is openly available via [http://hdl.handle.net/2429/39734 the cIRcle repository] (click on the video link [https://circle.ubc.ca/flashstreamview/bitstream/handle/2429/39734/Brumer_H_CAZypedia_OAW2011.wmv?sequence=3 ''view in browser''] or download the entire 325Mb video in WMV format; the ''CAZypedia'' presentation is at running time 37:00-55:50).  The corresponding [https://circle.ubc.ca/bitstream/handle/2429/39734/Brumer_H_CAZypedia_OAW2011.pptx?sequence=1 presentation slides] are also available via cIRcle, and can be read independently of the video.
-;22 May 2013: Ushering in a new phase in ''CAZypedia's'' development, Author '''[[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]]''' and Senior Curator '''[[User:Al Boraston|Alisdair Boraston]]''' finalize ''CAZypedia's'' first [[Carbohydrate Binding Module Families|Carbohydrate Binding Module Family]] page, '''[[CBM32]]'''.  Concomitantly, '''[[User:Alicia Lammerts van Bueren|Alicia Lammerts van Bueren]]''' starts crafting an extensive [[Carbohydrate-binding modules|Lexicon entry on CBMs]] .
+;22 May 2013: Ushering in a new phase in ''CAZypedia's'' development, Author [[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]] and Senior Curator [[User:Al Boraston|Alisdair Boraston]] finalize ''CAZypedia's'' first [[Carbohydrate Binding Module Families|Carbohydrate Binding Module Family]] page, [[CBM32]].  Concomitantly, [[User:Alicia Lammerts van Bueren|Alicia Lammerts van Bueren]] starts crafting an extensive [[Carbohydrate-binding modules|Lexicon entry on CBMs]] .
 ;28 June 2013: ''CAZypedia'' gets an additional nod in the formal literature, in a review by [[User:Shinya Fushinobu|Shinya Fushinobu]], Victor Alves, and [[User:Pedro Coutinho|Pedro Coutinho]] in ''Current Opinion in Structural Biology'' <cite>Fushinobu2013</cite>.
-;19 September 2013: ''CAZypedia'' begins to encompass the [[Auxiliary Activity Families]] with the completion of the '''[[AA9]]''' lytic polysaccharide mono-oxygenase (LPMO) page by '''[[User:Paul Harris|Paul Harris]]'''.
+;19 September 2013: ''CAZypedia'' begins to encompass the [[Auxiliary Activity Families]] with the completion of the [[AA9]] lytic polysaccharide mono-oxygenase (LPMO) page by [[User:Paul Harris|Paul Harris]].
-;30 September 2013: Yet another new phase in ''CAZypedia's'' development begins with the completion of the first [[Polysaccharide Lyase Families|Polysaccharide Lyase Family]] page, '''[[PL2]]''', by '''[[User:Wade Abbott|Wade Abbott]]'''.  This follows an initiative spearheaded by '''[[User:Wade Abbott|Wade Abbott]]''' and '''[[User:Michael Suits|Michael Suits]]''' at the [http://www.grc.org/programs.aspx?year=2013&program=cellulo 2013  Cellulosomes, Cellulases & Other Carbohydrate Modifying Enzymes Gordon Research Conference] to cover all the [[Polysaccharide Lyase Families|PL Families]] in ''CAZypedia''.
+;30 September 2013: Yet another new phase in ''CAZypedia's'' development begins with the completion of the first [[Polysaccharide Lyase Families|Polysaccharide Lyase Family]] page, [[PL2]], by [[User:Wade Abbott|Wade Abbott]].  This follows an initiative spearheaded by [[User:Wade Abbott|Wade Abbott]] and [[User:Michael Suits|Michael Suits]] at the [http://www.grc.org/programs.aspx?year=2013&program=cellulo 2013  Cellulosomes, Cellulases & Other Carbohydrate Modifying Enzymes Gordon Research Conference] to cover all the [[Polysaccharide Lyase Families|PL Families]] in ''CAZypedia''.
 ;21 November 2013: The [http://www.cazy.org CAZy team] kindly mentions ''CAZypedia'' in their 2013 update in  ''Nucleic Acids Research'' <cite>Lombard2013</cite>.
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 ;11 October 2017: The ''CAZypedia'' Consortium publishes an article in ''Glycobiology'' to celebrate ''CAZypedia's'' 10th anniversary online, entitled "Ten years of ''CAZypedia'': A living encyclopedia of carbohydrate-active enzymes."  In addition to the published journal article <cite>CAZypedia2017</cite>, a post-print version (final accepted manuscript) will be [http://hdl.handle.net/2429/63428 freely available]. This article was written by [[User:Harry Brumer|Harry Brumer]] and [[User:Spencer Williams|Spencer Williams]], with input from [[User:Birte Svensson|Birte Svensson]], [[User:Bernard Henrissat|Bernard Henrissat]], [[User:Gideon Davies|Gideon Davies]], [[User:Harry Gilbert|Harry Gilbert]], [[User:Anthony Clarke|Anthony Clarke]], [[User:Warren Wakarchuk|Warren Wakarchuk]], [[User:Wade Abbott|Wade Abbott]], [[User:David Vocadlo|David Vocadlo]], [[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]], [[User:Al Boraston|Alisdair Boraston]], [[User:Antoni Planas|Antoni Planas]], and [[User:Shinya Fushinobu|Shinya Fushinobu]], on behalf of all of ''CAZypedia's'' present and future [[:Category:Contributors|Contributors]].
-;4 February 2019: A new milestone in ''CAZypedia's'' development was reached today with the completion of the first [[Carbohydrate Esterase Families|Carbohydrate Esterase Family]] page, '''[[CE4]]''', by [[Author]] '''[[User:Alex Anderson|Alex Anderson]]''' and [[Responsible Curator]] '''[[User:Michael Suits|Michael Suits]]'''.
+;4 February 2019: A new milestone in ''CAZypedia's'' development was reached today with the completion of the first [[Carbohydrate Esterase Families|Carbohydrate Esterase Family]] page, [[CE4]], by [[Author]] [[User:Alex Anderson|Alex Anderson]] and [[Responsible Curator]] [[User:Michael Suits|Michael Suits]].
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 ;28 July 2014: ''CAZypedia'' marks the key milestone of 100 [[Curator Approved]] [[Glycoside Hydrolase Families|Glycoside Hydrolase Family]] pages, thanks to the completion of the [[Glycoside Hydrolase Family 12]] page by [[User:Gerlind Sulzenbacher|Gerlind Sulzenbacher]].
-;11 October 2017: The ''CAZypedia'' Consortium publishes an article in ''Glycobiology'' to celebrate ''CAZypedia's'' 10th anniversary online, entitled "Ten years of ''CAZypedia'': A living encyclopedia of carbohydrate-active enzymes."  In addition to the published journal article <cite>CAZypedia2017</cite>, a post-print version (final accepted manuscript) will be [http://hdl.handle.net/2429/63428 freely available]. This article was written by [[User:Harry Brumer|Harry Brumer]] and [[User:Spencer Williams|Spencer Williams]], with input from [[User:Birte Svensson|Birte Svensson]], [[User:Bernard Henrissat|Bernard Henrissat]], [[User:Gideon Davies|Gideon Davies]], [[User:Harry Gilbert|Harry Gilbert]], [[User:Anthony Clarke|Anthony Clarke]], [[User:Warren Wakarchuk|Warren Wakarchuk]], [[User:Wade Abbott|Wade Abbott]], [[User:David Vocadlo|David Vocadlo]], [[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]], [[User:Alisdair Boraston|Al Boraston]], [[User:Antoni Planas|Antoni Planas]], and [[User:Shinya Fushinobu|Shinya Fushinobu]], on behalf of all of ''CAZypedia's'' present and future [[:Category:Contributors|Contributors]].
+;11 October 2017: The ''CAZypedia'' Consortium publishes an article in ''Glycobiology'' to celebrate ''CAZypedia's'' 10th anniversary online, entitled "Ten years of ''CAZypedia'': A living encyclopedia of carbohydrate-active enzymes."  In addition to the published journal article <cite>CAZypedia2017</cite>, a post-print version (final accepted manuscript) will be [http://hdl.handle.net/2429/63428 freely available]. This article was written by [[User:Harry Brumer|Harry Brumer]] and [[User:Spencer Williams|Spencer Williams]], with input from [[User:Birte Svensson|Birte Svensson]], [[User:Bernard Henrissat|Bernard Henrissat]], [[User:Gideon Davies|Gideon Davies]], [[User:Harry Gilbert|Harry Gilbert]], [[User:Anthony Clarke|Anthony Clarke]], [[User:Warren Wakarchuk|Warren Wakarchuk]], [[User:Wade Abbott|Wade Abbott]], [[User:David Vocadlo|David Vocadlo]], [[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]], [[User:Al Boraston|Alisdair Boraston]], [[User:Antoni Planas|Antoni Planas]], and [[User:Shinya Fushinobu|Shinya Fushinobu]], on behalf of all of ''CAZypedia's'' present and future [[:Category:Contributors|Contributors]].
 ;4 February 2019: A new milestone in ''CAZypedia's'' development was reached today with the completion of the first [[Carbohydrate Esterase Families|Carbohydrate Esterase Family]] page, '''[[CE4]]''', by [[Author]] '''[[User:Alex Anderson|Alex Anderson]]''' and [[Responsible Curator]] '''[[User:Michael Suits|Michael Suits]]'''.

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 ;28 July 2014: ''CAZypedia'' marks the key milestone of 100 [[Curator Approved]] [[Glycoside Hydrolase Families|Glycoside Hydrolase Family]] pages, thanks to the completion of the [[Glycoside Hydrolase Family 12]] page by [[User:Gerlind Sulzenbacher|Gerlind Sulzenbacher]].
-;11 October 2017: The ''CAZypedia'' Consortium publishes an article in ''Glycobiology'' to celebrate ''CAZypedia's'' 10th anniversary online, entitled "Ten years of ''CAZypedia'': A living encyclopedia of carbohydrate-active enzymes."  In addition to the published journal article <cite>CAZypedia2017</cite>, a post-print version (final accepted manuscript) will be [http://hdl.handle.net/2429/63428 freely available]. This article was written by [[User:Harry Brumer|Harry Brumer]] and [[User:Spencer Williams|Spencer Williams]], with input from [[User:Birte Svensson|Birte Svensson]], [[User:Bernard Henrissat|Bernard Henrissat]], [[User:Gideon Davies|Gideon Davies]], [[User:Harry Gilbert|Harry Gilbert]], [[User:Anthony Clarke|Anthony Clarke]], [[User:Warren Wakarchuk|Warren Wakarchuk]], [[User:Wade Abbott|Wade Abbott]], [[User:David Vocadlo|David Vocadlo]], [[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]], [[User:Alisdair Boraston|Alisdair Boraston]], [[User:Antoni Planas|Antoni Planas]], and [[User:Shinya Fushinobu|Shinya Fushinobu]], on behalf of all of ''CAZypedia's'' present and future [[:Category:Contributors|Contributors]].
+;11 October 2017: The ''CAZypedia'' Consortium publishes an article in ''Glycobiology'' to celebrate ''CAZypedia's'' 10th anniversary online, entitled "Ten years of ''CAZypedia'': A living encyclopedia of carbohydrate-active enzymes."  In addition to the published journal article <cite>CAZypedia2017</cite>, a post-print version (final accepted manuscript) will be [http://hdl.handle.net/2429/63428 freely available]. This article was written by [[User:Harry Brumer|Harry Brumer]] and [[User:Spencer Williams|Spencer Williams]], with input from [[User:Birte Svensson|Birte Svensson]], [[User:Bernard Henrissat|Bernard Henrissat]], [[User:Gideon Davies|Gideon Davies]], [[User:Harry Gilbert|Harry Gilbert]], [[User:Anthony Clarke|Anthony Clarke]], [[User:Warren Wakarchuk|Warren Wakarchuk]], [[User:Wade Abbott|Wade Abbott]], [[User:David Vocadlo|David Vocadlo]], [[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]], [[User:Alisdair Boraston|Al Boraston]], [[User:Antoni Planas|Antoni Planas]], and [[User:Shinya Fushinobu|Shinya Fushinobu]], on behalf of all of ''CAZypedia's'' present and future [[:Category:Contributors|Contributors]].
 ;4 February 2019: A new milestone in ''CAZypedia's'' development was reached today with the completion of the first [[Carbohydrate Esterase Families|Carbohydrate Esterase Family]] page, '''[[CE4]]''', by [[Author]] '''[[User:Alex Anderson|Alex Anderson]]''' and [[Responsible Curator]] '''[[User:Michael Suits|Michael Suits]]'''.

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 ;05 October 2008: A contemporary review of the [http://www.cazy.org CAZy Database] by [[User:Bernard Henrissat|Bernard Henrissat]], [[User:Pedro Coutinho|Pedro Coutinho]], and colleagues appears online in ''Nucleic Acids Research'' <cite>Cantarel2009</cite>.  This paper is the first to mention ''CAZypedia'' in the printed scientific literature, if only briefly.
-;June 2009: At the [http://www.grc.org/programs.aspx?year=2009&program=carbo 2009 Gordon Research Conference on Carbohydrates] (June 14-19) [[User:Bernard Henrissat|Bernard Henrissat]] and [[User:Steve Withers|Steve Withers]] take primary responsibility for drafting a table of [[Responsible Curator]]s for the first round of invitations to contribute to ''CAZypedia'', with input and approval from other [[Board of Curators|Senior Curators]] [[User:Harry Gilbert|Harry Gilbert]], [[User:Gideon Davies|Gideon Davies]], [[User:Alisdair Boraston|Alisdair Boraston]] and [[User:Harry Brumer|Harry Brumer]].  On June 22, the [[CAZypedia:History/Original invitation letter|first invitation letter]] is sent out to 29 scientists in the field, covering 69 [[Glycoside Hydrolase Families]].  The original spreadsheet eventually becomes the [[CAZypedia:Assigned pages|table of Assigned Pages]] on ''CAZypedia''.
+;June 2009: At the [http://www.grc.org/programs.aspx?year=2009&program=carbo 2009 Gordon Research Conference on Carbohydrates] (June 14-19) [[User:Bernard Henrissat|Bernard Henrissat]] and [[User:Steve Withers|Steve Withers]] take primary responsibility for drafting a table of [[Responsible Curator]]s for the first round of invitations to contribute to ''CAZypedia'', with input and approval from other [[Board of Curators|Senior Curators]] [[User:Harry Gilbert|Harry Gilbert]], [[User:Gideon Davies|Gideon Davies]], [[User:Al Boraston|Alisdair Boraston]] and [[User:Harry Brumer|Harry Brumer]].  On June 22, the [[CAZypedia:History/Original invitation letter|first invitation letter]] is sent out to 29 scientists in the field, covering 69 [[Glycoside Hydrolase Families]].  The original spreadsheet eventually becomes the [[CAZypedia:Assigned pages|table of Assigned Pages]] on ''CAZypedia''.
 ;30 July 2009: [[Main Page|''CAZypedia'']] is presented at the 2009 Gordon Research Conference on [http://www.grc.org/programs.aspx?year=2009&program=cellul Cellulosomes, Cellulases & Other Carbohydrate Modifying Enzymes] by [[User:Harry Brumer|Harry Brumer]], with support from [[User:Harry Gilbert|Harry Gilbert]] and [[User:Bernard Henrissat|Bernard Henrissat]].  This is the first public launch of ''CAZypedia'' to the CAZyme community at large.