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	<id>https://www.cazypedia.org/index.php?action=history&amp;feed=atom&amp;title=Glycoside_Hydrolase_Family_29</id>
	<title>Glycoside Hydrolase Family 29 - Revision history</title>
	<link rel="self" type="application/atom+xml" href="https://www.cazypedia.org/index.php?action=history&amp;feed=atom&amp;title=Glycoside_Hydrolase_Family_29"/>
	<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;action=history"/>
	<updated>2026-05-05T12:15:04Z</updated>
	<subtitle>Revision history for this page on the wiki</subtitle>
	<generator>MediaWiki 1.35.10</generator>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=16658&amp;oldid=prev</id>
		<title>Harry Brumer: Text replacement - &quot;\^\^\^(.*)\^\^\^&quot; to &quot;$1&quot;</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=16658&amp;oldid=prev"/>
		<updated>2021-12-18T21:19:20Z</updated>

		<summary type="html">&lt;p&gt;Text replacement - &amp;quot;\^\^\^(.*)\^\^\^&amp;quot; to &amp;quot;&lt;a href=&quot;/index.php?title=User:$1&amp;amp;action=edit&amp;amp;redlink=1&quot; class=&quot;new&quot; title=&quot;User:$1 (page does not exist)&quot;&gt;$1&lt;/a&gt;&amp;quot;&lt;/p&gt;
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				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 21:19, 18 December 2021&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l1&quot; &gt;Line 1:&lt;/td&gt;
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&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;{{CuratorApproved}}&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;{{CuratorApproved}}&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;* [[Author]]: &lt;del class=&quot;diffchange diffchange-inline&quot;&gt;^^^&lt;/del&gt;Gerlind Sulzenbacher&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;^^^&lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;* [[Author]]: &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[[User:&lt;/ins&gt;Gerlind Sulzenbacher&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;|Gerlind Sulzenbacher]]&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;* [[Responsible Curator]]:  &lt;del class=&quot;diffchange diffchange-inline&quot;&gt;^^^&lt;/del&gt;Steve Withers&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;^^^&lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;* [[Responsible Curator]]:  &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[[User:&lt;/ins&gt;Steve Withers&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;|Steve Withers]]&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;----&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;----&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Harry Brumer</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14432&amp;oldid=prev</id>
		<title>Harry Brumer: /* Three-dimensional structures */</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14432&amp;oldid=prev"/>
		<updated>2020-01-07T16:58:01Z</updated>

		<summary type="html">&lt;p&gt;&lt;span dir=&quot;auto&quot;&gt;&lt;span class=&quot;autocomment&quot;&gt;Three-dimensional structures&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left diff-editfont-monospace&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
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				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 16:58, 7 January 2020&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l43&quot; &gt;Line 43:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 43:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in [[GH107]], which together with GH29 forms Clan GH-R. GH29 also bears some structural similarity to families [[GH13]] ([[Clan]] GH-H) and [[GH27]] ([[Clan]] GH-D).&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in [[GH107]], which together with GH29 forms &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[[&lt;/ins&gt;Clan&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;]] &lt;/ins&gt;GH-R. GH29 also bears some structural similarity to families [[GH13]] ([[Clan]] GH-H) and [[GH27]] ([[Clan]] GH-D).&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Transglycosylation and Glycosynthases ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Transglycosylation and Glycosynthases ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;

&lt;!-- diff cache key cazypedia:diff::1.12:old-14431:rev-14432 --&gt;
&lt;/table&gt;</summary>
		<author><name>Harry Brumer</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14431&amp;oldid=prev</id>
		<title>Harry Brumer: /* Three-dimensional structures */</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14431&amp;oldid=prev"/>
		<updated>2020-01-07T16:57:32Z</updated>

		<summary type="html">&lt;p&gt;&lt;span dir=&quot;auto&quot;&gt;&lt;span class=&quot;autocomment&quot;&gt;Three-dimensional structures&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left diff-editfont-monospace&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
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				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 16:57, 7 January 2020&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l43&quot; &gt;Line 43:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 43:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in [[GH107]], which together with GH29 forms Clan GH-R. GH29 also bears some structural similarity to families [[GH13]] (Clan GH-H) and [[GH27]] (Clan GH-D).&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in [[GH107]], which together with GH29 forms Clan GH-R. GH29 also bears some structural similarity to families [[GH13]] (&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[[&lt;/ins&gt;Clan&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;]] &lt;/ins&gt;GH-H) and [[GH27]] (&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[[&lt;/ins&gt;Clan&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;]] &lt;/ins&gt;GH-D).&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Transglycosylation and Glycosynthases ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Transglycosylation and Glycosynthases ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Harry Brumer</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14430&amp;oldid=prev</id>
		<title>Harry Brumer: /* Three-dimensional structures */</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14430&amp;oldid=prev"/>
		<updated>2020-01-07T16:57:12Z</updated>

		<summary type="html">&lt;p&gt;&lt;span dir=&quot;auto&quot;&gt;&lt;span class=&quot;autocomment&quot;&gt;Three-dimensional structures&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left diff-editfont-monospace&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;tr class=&quot;diff-title&quot; lang=&quot;en-CA&quot;&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 16:57, 7 January 2020&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l43&quot; &gt;Line 43:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 43:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in families [[GH13]] and [[GH27]].&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[[GH107]], which together with GH29 forms Clan GH-R. GH29 also bears some structural similarity to &lt;/ins&gt;families [[GH13]] &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;(Clan GH-H) &lt;/ins&gt;and [[GH27]] &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;(Clan GH-D)&lt;/ins&gt;.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Transglycosylation and Glycosynthases ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Transglycosylation and Glycosynthases ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Harry Brumer</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14429&amp;oldid=prev</id>
		<title>Harry Brumer at 16:53, 7 January 2020</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14429&amp;oldid=prev"/>
		<updated>2020-01-07T16:53:51Z</updated>

		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left diff-editfont-monospace&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
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				&lt;tr class=&quot;diff-title&quot; lang=&quot;en-CA&quot;&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 16:53, 7 January 2020&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l41&quot; &gt;Line 41:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 41:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Three-dimensional structures ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Three-dimensional structures ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;Very few structures are available for GH29 enzymes. &lt;/del&gt;The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in families [[GH13]] and [[GH27]].&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in families [[GH13]] and [[GH27]].&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Harry Brumer</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14428&amp;oldid=prev</id>
		<title>Harry Brumer: updated Clan entry in table</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=14428&amp;oldid=prev"/>
		<updated>2020-01-07T16:52:02Z</updated>

		<summary type="html">&lt;p&gt;updated Clan entry in table&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left diff-editfont-monospace&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
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				&lt;tr class=&quot;diff-title&quot; lang=&quot;en-CA&quot;&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 16:52, 7 January 2020&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l11&quot; &gt;Line 11:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 11:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|-&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|-&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|'''Clan'''     &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|'''Clan'''     &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;none&lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;GH-R&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|-&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|-&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|'''Mechanism'''&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|'''Mechanism'''&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Harry Brumer</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=8852&amp;oldid=prev</id>
		<title>Spencer Williams: /* Kinetics and Mechanism */</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=8852&amp;oldid=prev"/>
		<updated>2013-06-27T05:48:30Z</updated>

		<summary type="html">&lt;p&gt;&lt;span dir=&quot;auto&quot;&gt;&lt;span class=&quot;autocomment&quot;&gt;Kinetics and Mechanism&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left diff-editfont-monospace&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
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				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 05:48, 27 June 2013&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l31&quot; &gt;Line 31:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 31:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Kinetics and Mechanism ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Kinetics and Mechanism ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GH29 α-fucosidases  are [[retaining]] enzymes following a [[classical Koshland double-displacement mechanism]], as first proposed in 1987 for human liver α-fucosidase ''via'' burst kinetics experiments and  using methanol as an alternative glycone acceptor to produce methyl α-L-fucoside &amp;lt;cite&amp;gt;2&amp;lt;/cite&amp;gt;. This has been further confirmed by &amp;lt;sup&amp;gt;1&amp;lt;/sup&amp;gt;H NMR monitoring of the reaction catalyzed by an α-L-fucosidase from ''Thermus sp.'' &amp;lt;cite&amp;gt;3&amp;lt;/cite&amp;gt;, and a α-L-fucosidase from the marine mollusc ''Pecten maximus'' &amp;lt;cite&amp;gt;4&amp;lt;/cite&amp;gt;, as well as by COSY and &amp;lt;sup&amp;gt;1&amp;lt;/sup&amp;gt;H-&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C NMR spectroscopy analysis of the interglycosidic linkage of disaccharides formed by the [[&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;transglycosylation&lt;/del&gt;]] action of ''Sulfolobus solfataricus'' α-L-fucosidase, Ssα-fuc &amp;lt;cite&amp;gt;5&amp;lt;/cite&amp;gt;. [[GH95]] α-fucosidases, in contrast, operate with inversion of the anomeric configuration.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GH29 α-fucosidases  are [[retaining]] enzymes following a [[classical Koshland double-displacement mechanism]], as first proposed in 1987 for human liver α-fucosidase ''via'' burst kinetics experiments and  using methanol as an alternative glycone acceptor to produce methyl α-L-fucoside &amp;lt;cite&amp;gt;2&amp;lt;/cite&amp;gt;. This has been further confirmed by &amp;lt;sup&amp;gt;1&amp;lt;/sup&amp;gt;H NMR monitoring of the reaction catalyzed by an α-L-fucosidase from ''Thermus sp.'' &amp;lt;cite&amp;gt;3&amp;lt;/cite&amp;gt;, and a α-L-fucosidase from the marine mollusc ''Pecten maximus'' &amp;lt;cite&amp;gt;4&amp;lt;/cite&amp;gt;, as well as by COSY and &amp;lt;sup&amp;gt;1&amp;lt;/sup&amp;gt;H-&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C NMR spectroscopy analysis of the interglycosidic linkage of disaccharides formed by the [[&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;transglycosylases|transglycosylase&lt;/ins&gt;]] action of ''Sulfolobus solfataricus'' α-L-fucosidase, Ssα-fuc &amp;lt;cite&amp;gt;5&amp;lt;/cite&amp;gt;. [[GH95]] α-fucosidases, in contrast, operate with inversion of the anomeric configuration.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Catalytic Residues ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Catalytic Residues ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Spencer Williams</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=8572&amp;oldid=prev</id>
		<title>Harry Brumer: /* References */</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=8572&amp;oldid=prev"/>
		<updated>2013-05-10T16:02:55Z</updated>

		<summary type="html">&lt;p&gt;&lt;span dir=&quot;auto&quot;&gt;&lt;span class=&quot;autocomment&quot;&gt;References&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left diff-editfont-monospace&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
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				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 16:02, 10 May 2013&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l68&quot; &gt;Line 68:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 68:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;#11 pmid=15207718  &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;#11 pmid=15207718  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;#12 pmid=17240986              &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;#12 pmid=17240986              &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;#13 &lt;del class=&quot;diffchange diffchange-inline&quot;&gt;Cobucci-Ponzano B, Conte F, Bedini E, Corsaro MM, Parrilli M, Sulzenbacher G, Lipski A, Dal Piaz F, Lepore L, Rossi M, and Moracci, M. ''β-glycosyl azides as substrates for α-glycosynthases: preparation of efficient α-L-fucosynthases''. Chem Biol 2009 Oct; 16(10) 1097-108. [http://linkinghub.elsevier.com/retrieve/pii/S1074552109003238 DOI: 10.1016/j.chembiol.2009.09.013] &lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;#13 &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;pmid=19875083&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt; &lt;/div&gt;&lt;/td&gt;&lt;td colspan=&quot;2&quot;&gt; &lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&amp;lt;/biblio&amp;gt;  &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&amp;lt;/biblio&amp;gt;  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;[[Category:Glycoside Hydrolase Families|GH029]]&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;[[Category:Glycoside Hydrolase Families|GH029]]&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Harry Brumer</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=7328&amp;oldid=prev</id>
		<title>Harry Brumer: updated CAZyDBlink</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=7328&amp;oldid=prev"/>
		<updated>2012-05-11T16:57:20Z</updated>

		<summary type="html">&lt;p&gt;updated CAZyDBlink&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left diff-editfont-monospace&quot; data-mw=&quot;interface&quot;&gt;
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				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 16:57, 11 May 2012&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l21&quot; &gt;Line 21:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 21:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''CAZy DB link'''&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|{{Hl2}} colspan=&amp;quot;2&amp;quot; align=&amp;quot;center&amp;quot; |'''CAZy DB link'''&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|-&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|-&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;| colspan=&amp;quot;2&amp;quot; |&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;http://www.cazy.org/fam/&lt;/del&gt;GH29.html&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;| colspan=&amp;quot;2&amp;quot; |&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;{{CAZyDBlink}}&lt;/ins&gt;GH29.html&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|}&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;|}&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&amp;lt;/div&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&amp;lt;/div&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;

&lt;!-- diff cache key cazypedia:diff::1.12:old-5128:rev-7328 --&gt;
&lt;/table&gt;</summary>
		<author><name>Harry Brumer</name></author>
	</entry>
	<entry>
		<id>https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=5128&amp;oldid=prev</id>
		<title>Spencer Williams at 11:45, 5 July 2010</title>
		<link rel="alternate" type="text/html" href="https://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Family_29&amp;diff=5128&amp;oldid=prev"/>
		<updated>2010-07-05T11:45:46Z</updated>

		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left diff-editfont-monospace&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
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				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 11:45, 5 July 2010&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l34&quot; &gt;Line 34:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 34:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Catalytic Residues ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Catalytic Residues ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The [[catalytic nucleophile]] in GH29 was first identified in the ''Sulfolobus solfataricus'' α-L-fucosidase, Ssα-fuc, as Asp242 in the sequence VYF&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;WWI via chemical rescue of an inactive mutant with sodium azide &amp;lt;cite&amp;gt;6&amp;lt;/cite&amp;gt;. Concomitantly the [[catalytic nucleophile]] of ''Thermotoga maritima'' α-L-fucosidase, Tmα-fuc, was confirmed to be Asp224 in the sequence LWN&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;MGW through trapping of the 2-deoxy-2-fluorofucosyl-enzyme [[intermediate]] and subsequent peptide mapping via LC-MS/MS technologies, as well as by chemical rescue of an inactive mutant &amp;lt;cite&amp;gt;7&amp;lt;/cite&amp;gt;. The trapping of the 2-deoxy-2-fluorofucosyl-enzyme intermediate in Tmα-fuc was corroborated by crystallographic studies &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;. The [[catalytic nucleophile]] of the human enzyme FucA1 has recently been identified as being Asp225 &amp;lt;cite&amp;gt;9&amp;lt;/cite&amp;gt;.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The [[catalytic nucleophile]] in GH29 was first identified in the ''Sulfolobus solfataricus'' α-L-fucosidase, Ssα-fuc, as Asp242 in the sequence VYF&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;WWI via chemical rescue of an inactive mutant with sodium azide &amp;lt;cite&amp;gt;6&amp;lt;/cite&amp;gt;. Concomitantly the [[catalytic nucleophile]] of ''Thermotoga maritima'' α-L-fucosidase, Tmα-fuc, was confirmed to be Asp224 in the sequence LWN&amp;lt;u&amp;gt;'''D'''&amp;lt;/u&amp;gt;MGW through trapping of the 2-deoxy-2-fluorofucosyl-enzyme [[intermediate]] and subsequent peptide mapping via LC-MS/MS technologies, as well as by chemical rescue of an inactive mutant &amp;lt;cite&amp;gt;7&amp;lt;/cite&amp;gt;. The trapping of the 2-deoxy-2-fluorofucosyl-enzyme &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[[&lt;/ins&gt;intermediate&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;]] &lt;/ins&gt;in Tmα-fuc was corroborated by crystallographic studies &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;. The [[catalytic nucleophile]] of the human enzyme FucA1 has recently been identified as being Asp225 &amp;lt;cite&amp;gt;9&amp;lt;/cite&amp;gt;.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Whereas the [[catalytic nucleophile]] in GH29 has been shown to be a conserved aspartate residue, the identity of the [[general acid/base]] is still controversial.  Structural and mutagenesis studies of Tmα-fuc provided strong evidence for the variant Glu266 being the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;. In the crystal structure the carboxyl function of this residue is 5.5 Å away from that of the [[catalytic nucleophile]] Asp224, a distance commonly observed in retaining glycosidases proceeding ''via'' a [[classical Koshland double-displacement mechanism]]. Although multiple sequence alignments show that Glu266 is not conserved within GH29, the residue is structurally conserved in two 3-D structures of α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', recently deposited in the [http://www.pdb.org/ Protein Data Bank] (PDB accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza]). Studies of Ssα-fuc demonstrated that mutation of the Glu residue corresponding in sequence to Tmα-fuc Glu266 barely impaired the catalytic activity of the enzyme, whereas a Glu58Gly mutant had a 4000 fold lower ''k&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt;'' and could be chemically rescued &amp;lt;cite&amp;gt;10&amp;lt;/cite&amp;gt;. In the crystal structure of Tmα-fuc in complex with fucose &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, the residue corresponding to Ssα-fuc Glu58, Glu66, is found 7.5 Å away from the [[catalytic nucleophile]] Asp224 and hydrogen bonded to the C-3 hydroxyl group of fucose, which altogether makes this residue an unlikely candidate for the function of the [[general acid/base]]. A recent study of the human α-L-fucosidase FucA1, carefully done combining bioinformatics, structural modelling, mutagenesis, chemical rescue with azide and &amp;lt;sup&amp;gt;1&amp;lt;/sup&amp;gt;H NMR spectral analysis, identified Glu289 as the [[general acid/base]] &amp;lt;cite&amp;gt;9&amp;lt;/cite&amp;gt;. The equivalent residue in Tmα-fuc, Glu281, as inferred from sequence alignment of FucA1 and Tmα-fuc, points to the interior of the (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; barrel and lies about 15 Å apart form the catalytic centre.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Whereas the [[catalytic nucleophile]] in GH29 has been shown to be a conserved aspartate residue, the identity of the [[general acid/base]] is still controversial.  Structural and mutagenesis studies of Tmα-fuc provided strong evidence for the variant Glu266 being the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;. In the crystal structure the carboxyl function of this residue is 5.5 Å away from that of the [[catalytic nucleophile]] Asp224, a distance commonly observed in retaining glycosidases proceeding ''via'' a [[classical Koshland double-displacement mechanism]]. Although multiple sequence alignments show that Glu266 is not conserved within GH29, the residue is structurally conserved in two 3-D structures of α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', recently deposited in the [http://www.pdb.org/ Protein Data Bank] (PDB accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza]). Studies of Ssα-fuc demonstrated that mutation of the Glu residue corresponding in sequence to Tmα-fuc Glu266 barely impaired the catalytic activity of the enzyme, whereas a Glu58Gly mutant had a 4000 fold lower ''k&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt;'' and could be chemically rescued &amp;lt;cite&amp;gt;10&amp;lt;/cite&amp;gt;. In the crystal structure of Tmα-fuc in complex with fucose &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, the residue corresponding to Ssα-fuc Glu58, Glu66, is found 7.5 Å away from the [[catalytic nucleophile]] Asp224 and hydrogen bonded to the C-3 hydroxyl group of fucose, which altogether makes this residue an unlikely candidate for the function of the [[general acid/base]]. A recent study of the human α-L-fucosidase FucA1, carefully done combining bioinformatics, structural modelling, mutagenesis, chemical rescue with azide and &amp;lt;sup&amp;gt;1&amp;lt;/sup&amp;gt;H NMR spectral analysis, identified Glu289 as the [[general acid/base]] &amp;lt;cite&amp;gt;9&amp;lt;/cite&amp;gt;. The equivalent residue in Tmα-fuc, Glu281, as inferred from sequence alignment of FucA1 and Tmα-fuc, points to the interior of the (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; barrel and lies about 15 Å apart form the catalytic centre.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l41&quot; &gt;Line 41:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 41:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Three-dimensional structures ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Three-dimensional structures ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Very few structures are available for GH29 enzymes. The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme intermediate (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Very few structures are available for GH29 enzymes. The first crystal structure to be solved is that of the α-L-fucosidase from ''T. maritima'', Tmα-fuc (PDB ID [{{PDBlink}}1hl8 1hl8]). The simultaneous solution of the structures of an enzyme-product complex (PDB ID [{{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[[&lt;/ins&gt;intermediate&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;]] &lt;/ins&gt;(PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/base]] &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;, as described above. Tmα-fuc assembles as a hexamer and displays a two-domain fold, composed of a catalytic (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt;-like domain and a C-terminal β-sandwich domain. The two key active site residues are located at the C-terminal ends of strands β-strands 4 (nucleophile) and 6 (acid/base).&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Crystallization experiments for the ''S. solfataricus'' α-L-fucosidase, Ssα-fuc, were not very fruitful, but a small angle scattering study has been reported &amp;lt;cite&amp;gt;11&amp;lt;/cite&amp;gt;, which suggests a nonameric assembly of the enzyme in solution. Two crystal structures, arising from Structural Genomics initiatives, have been deposited in the [http://www.pdb.org/ Protein Data Bank] for α-L-fucosidases from ''Bacteroides thetaiotaomicron VPI-5482'', with accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza].               &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in families [[GH13]] and [[GH27]].&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The catalytic domain of Tmα-fuc does not adopt the canonical TIM-barrel (β/α)&amp;lt;sub&amp;gt;8&amp;lt;/sub&amp;gt; fold, as it lacks helices α5 and α6. Helix α5 is also missing in the structure of one of the ''B. thetaiotaomicron VPI-5482'' α-L-fucosidases, BT3798 (PDB ID [{{PDBlink}}3gza 3gza]), whereas α-L-fucosidase BT2192 (PDB ID [{{PDBlink}}3eyp 3eyp]) from the same organism adopts the canonical TIM-barrel fold. The three structures differ furthermore by the insertion/deletion of a considerable number of additional α-helices, 3&amp;lt;sub&amp;gt;10&amp;lt;/sub&amp;gt; helices, and extended surface loop regions. The closest structural homologues of GH29 enzymes within the CAZy classification can be found in families [[GH13]] and [[GH27]].&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l52&quot; &gt;Line 52:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 52:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;; First [[catalytic nucleophile]] identification : ''Sulfolobus solfataricus'' α-L-fucosidase by azide rescue of an inactivated mutant &amp;lt;cite&amp;gt;6&amp;lt;/cite&amp;gt; and confirmed shortly thereafter by labeling of the nucleophile and peptide mapping &amp;lt;cite&amp;gt;7&amp;lt;/cite&amp;gt;.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;; First [[catalytic nucleophile]] identification : ''Sulfolobus solfataricus'' α-L-fucosidase by azide rescue of an inactivated mutant &amp;lt;cite&amp;gt;6&amp;lt;/cite&amp;gt; and confirmed shortly thereafter by labeling of the nucleophile and peptide mapping &amp;lt;cite&amp;gt;7&amp;lt;/cite&amp;gt;.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;; First [[general acid/base]] residue identification : ''Thermotoga maritima'' α-fucosidase by X-ray structural analysis and mutagenesis &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;; First [[general acid/base]] residue identification : ''Thermotoga maritima'' α-fucosidase by X-ray structural analysis and mutagenesis &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;; First 3-D structure : ''Thermotoga maritima'' α-fucosidase, free  enzyme ([{{PDBlink}}1hl8 PDB 1hl8]), product complex ([{{PDBlink}}1odu PDB 1odu]) and glycosyl-enzyme intermediate ([{{PDBlink}}1hl9 PDB 1hl9]) &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;; First 3-D structure : ''Thermotoga maritima'' α-fucosidase, free  enzyme ([{{PDBlink}}1hl8 PDB 1hl8]), product complex ([{{PDBlink}}1odu PDB 1odu]) and glycosyl-enzyme &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[[&lt;/ins&gt;intermediate&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;]] &lt;/ins&gt;([{{PDBlink}}1hl9 PDB 1hl9]) &amp;lt;cite&amp;gt;8&amp;lt;/cite&amp;gt;.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== References ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== References ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;

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&lt;/table&gt;</summary>
		<author><name>Spencer Williams</name></author>
	</entry>
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