Help:References - Revision history

Harry Brumer: fixed broken ISBN

2013-06-04T15:38:24Z

fixed broken ISBN

Harry Brumer at 15:30, 4 June 2013

2013-06-04T15:30:36Z

Harry Brumer at 20:18, 26 September 2012

2012-09-26T20:18:41Z

Harry Brumer: removed link to EndNote help

2011-05-27T13:00:22Z

removed link to EndNote help

Harry Brumer: /* The bibliography */

2011-05-25T11:12:16Z

The bibliography

Harry Brumer at 08:39, 10 May 2011

2011-05-10T08:39:22Z

Harry Brumer at 00:40, 30 July 2010

2010-07-30T00:40:43Z

Harry Brumer: /* The bibliography */

2010-07-21T11:13:29Z

The bibliography

Harry Brumer: /* Using EndNote for formatting references in CAZypedia */

2010-02-22T12:37:52Z

Using EndNote for formatting references in CAZypedia

Harry Brumer at 12:36, 22 February 2010

2010-02-22T12:36:23Z

@@ Line 63: / Line 63: @@
 #Comfort2007 pmid=17323919
 #He1999 pmid=9312086
-#StickWillams2009 isbn=978-0-240-52118-3
+#StickWillams2009 isbn=9780240521183
 #Sinnott1990 Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. [http://dx.doi.org/10.1021/cr00105a006 DOI: 10.1021/cr00105a006]
 </biblio>

@@ Line 16: / Line 16: @@
 <nowiki>#Comfort2007 pmid=17323919</nowiki><br>
 <nowiki>#He1999 pmid=9312086</nowiki><br>
-<nowiki>#StickWillams2009 isbn=978-0-240-52118-3</nowiki><br>
+<nowiki>#StickWillams2009 isbn=9780240521183</nowiki><br>
 <nowiki>#Sinnott1990 Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. [http://dx.doi.org/10.1021/cr00105a006 DOI: 10.1021/cr00105a006]</nowiki><br>
 <nowiki></biblio></nowiki>

@@ Line 1: / Line 1: @@
-''CAZypedia'' uses the '''Biblio''' extension for creating in-text citations and a reference list.  Full details about '''Biblio''' can be found at the [http://openwetware.org/wiki/Wikiomics:Biblio Biblio homepage].  The following is a succinct set of instructions for using '''Biblio''' with ''CAZypedia''.
+''CAZypedia'' uses the '''BiblioPlus''' extension for creating in-text citations and a reference list.  Full details about '''BiblioPlus''' can be found at the [http://www.mediawiki.org/wiki/Extension:BiblioPlus BiblioPlus homepage] and the homepage of its predecessor, [http://openwetware.org/wiki/Wikiomics:Biblio Biblio].  The following is a succinct set of instructions for using '''BiblioPlus''' with ''CAZypedia''.
 == The basics ==
-In some sense, '''Biblio''' works a bit like the software program ''EndNote'', in that it automatically numbers the bibliography based on the order that citations appear in the text.  Also like ''EndNote'', '''Biblio''' relies on two pieces of information to make this happen:
+In some sense, '''BiblioPlus''' works a bit like the software program ''EndNote'', in that it automatically numbers the bibliography based on the order that citations appear in the text.  Also like ''EndNote'', '''BiblioPlus''' relies on two pieces of information to make this happen:
 # a ''bibliography'' section containing a list of the references you would like to cite in the text, and,
 # an in-text ''citation'', which "calls" the reference from the bibliography.
@@ Line 27: / Line 27: @@
 *# '''ISBN (<tt>isbn=</tt>''number''):''' For books, this will insert the full reference automatically, based only on the ISBN.  (See <tt>StickWillams2009</tt> ref. above.)
 *# '''A full, typed reference:''' Here, whatever follows the reference code is placed verbatim into the reference list - you can put in any text, with any formatting you want.  '''This should only be used when the reference does not have a PubMed ID or ISBN.''' (See <tt>Sinnott1990</tt> ref. above.)
-* References in the ''bibliography'' can be in any order, ''i.e.'', the reference list does not have to be in the same order as the citations appear in the text.  The '''Biblio''' software will automatically number the reference list correctly regardless.
+* References in the ''bibliography'' can be in any order, ''i.e.'', the reference list does not have to be in the same order as the citations appear in the text.  The '''BiblioPlus''' software will automatically number the reference list correctly regardless.
 === The in-text citation ===

← Older revision		Revision as of 13:00, 27 May 2011
Line 70:		Line 70:
	=== More referencing examples ===		=== More referencing examples ===
	This page demonstrates how the above would be used in a real ''CAZypedia'' page, and also includes some extra examples: [[Help:References/More examples]]		This page demonstrates how the above would be used in a real ''CAZypedia'' page, and also includes some extra examples: [[Help:References/More examples]]
−
−	~~== Using EndNote for formatting references in ''CAZypedia'' ==~~
−	It is in fact possible to use the reference software program EndNote to format references in a ''CAZypedia'' page. However, this method is not generally recommended, and should be attempted by experienced wiki users only. If you feel you belong to this category and want to try using EndNote, see the specific instructions [[Help:References/EndNote\|here]].

@@ Line 24: / Line 24: @@
 * The ''citation tag'' should be in [http://en.wikipedia.org/wiki/Harvard_reference#Author-date Harvard-style] '''Author-Year''' format; ''e.g.'' <tt>Sinnott1990</tt>, <tt>StickWillams2009</tt>, ''etc''.
 * References can be in one of three different forms:
-*# '''PubMed IDs (<tt>pmid=</tt>''number''):''' If the reference has a PubMed ID, placing this after the ''citation tag'' will insert to complete reference, as well as DOI and PubMed links, ''with no additional typing whatsoever on your part.'' (See <tt>Comfort2007</tt> and <tt>He1999</tt> refs. above.)
+*# '''PubMed IDs (<tt>pmid=</tt>''number''):''' If the reference has a PubMed ID, placing this after the ''citation tag'' will insert the complete reference, as well as DOI and PubMed links, ''with no additional typing whatsoever on your part.'' (See <tt>Comfort2007</tt> and <tt>He1999</tt> refs. above.)
-*# '''ISBN (<tt>isbn=</tt>''number''):''' For books, this will insert the full reference automatically, based only on the ISBN.  (See <tt>StickWillamsCarbohydrates</tt> ref. above.)
+*# '''ISBN (<tt>isbn=</tt>''number''):''' For books, this will insert the full reference automatically, based only on the ISBN.  (See <tt>StickWillams2009</tt> ref. above.)
 *# '''A full, typed reference:''' Here, whatever follows the reference code is placed verbatim into the reference list - you can put in any text, with any formatting you want.  '''This should only be used when the reference does not have a PubMed ID or ISBN.''' (See <tt>Sinnott1990</tt> ref. above.)
 * References in the ''bibliography'' can be in any order, ''i.e.'', the reference list does not have to be in the same order as the citations appear in the text.  The '''Biblio''' software will automatically number the reference list correctly regardless.

@@ Line 67: / Line 67: @@
 </biblio>
 </blockquote>
 == Using EndNote for formatting references in ''CAZypedia'' ==
 It is in fact possible to use the reference software program EndNote to format references in a ''CAZypedia'' page.  However, this method is not generally recommended, and should be attempted by experienced wiki users only.  If you feel you belong to this category and want to try using EndNote, see the specific instructions [[Help:References/EndNote|here]].

@@ Line 16: / Line 16: @@
 <nowiki>#Comfort2007 pmid=17323919</nowiki><br>
 <nowiki>#He1999 pmid=9312086</nowiki><br>
-<nowiki>#StickWillamsCarbohydrates isbn=978-0-240-52118-3</nowiki><br>
+<nowiki>#StickWillams2009 isbn=978-0-240-52118-3</nowiki><br>
 <nowiki>#Sinnott1990 Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. [http://dx.doi.org/10.1021/cr00105a006 DOI: 10.1021/cr00105a006]</nowiki><br>
 <nowiki></biblio></nowiki>
@@ Line 22: / Line 22: @@
 '''''Note that:'''''
-* The ''citation tag'' can be whatever you want; ''e.g.'' <tt>Sinnott1990</tt>, <tt>StickWillamsCarbohydrates</tt>, or even a number.
+* The ''citation tag'' should be in [http://en.wikipedia.org/wiki/Harvard_reference#Author-date Harvard-style] '''Author-Year''' format; ''e.g.'' <tt>Sinnott1990</tt>, <tt>StickWillams2009</tt>, ''etc''.
 * References can be in one of three different forms:
 *# '''PubMed IDs (<tt>pmid=</tt>''number''):''' If the reference has a PubMed ID, placing this after the ''citation tag'' will insert to complete reference, as well as DOI and PubMed links, ''with no additional typing whatsoever on your part.'' (See <tt>Comfort2007</tt> and <tt>He1999</tt> refs. above.)
@@ Line 36: / Line 35: @@
 '''For example, citations in the main text might look like this in the wiki editor:'''
 ----
-* Robert Stick and Spencer Williams wrote a book about carbohydrates and enzymes <nowiki><cite>StickWillamsCarbohydrates</cite></nowiki>.
+* Robert Stick and Spencer Williams wrote a book about carbohydrates and enzymes <nowiki><cite>StickWillams2009</cite></nowiki>.
 * The catalytic mechanisms of enzymic glycosyl transfer have been reviewed <nowiki><cite>Sinnott1990</cite></nowiki>.
 * If you want to include multiple references in one place, that is OK, too.  Just separate them with spaces in one pair of <tt><nowiki><cite></nowiki></tt> tags, like this: <nowiki><cite>He1999 Comfort2007</cite></nowiki>.
@@ Line 42: / Line 41: @@
 '''''Note that:'''''
-* The ''citation tags'' will be automatically converted into reference numbers according to their first use in the text.  '''You should not try to type/correct the reference numbers; errors in numbering are usually due to typos in the ''citation tags'' themselves (either in the text or in the bibliography).'''
+* The ''citation tags'' will be automatically converted into reference numbers according to their first use in the text.  '''You should not try to (and you won't be able to) type/correct the reference numbers; errors in numbering are usually due to typos in the ''citation tags'' themselves (either in the text or in the bibliography).'''
-* To make it easier keep track of your ''citation tags'', using something like Harvard style (''author-year'') referencing can be helpful (e.g., <tt>Sinnott1990</tt>)
+* As mentioned above, ''citation tags'', should be in [http://en.wikipedia.org/wiki/Harvard_reference#Author-date Harvard-style] '''Author-Year''' format (e.g., <tt>Sinnott1990</tt>)
 * ''Citation tags'' are case sensitive.
@@ Line 53: / Line 52: @@
 '''Main text:'''
 ----
-* Robert Stick and Spencer Williams wrote a book about carbohydrates and enzymes <cite>StickWillamsCarbohydrates</cite>.
+* Robert Stick and Spencer Williams wrote a book about carbohydrates and enzymes <cite>StickWillams2009</cite>.
 * The catalytic mechanisms of enzymic glycosyl transfer have been reviewed <cite>Sinnott1990</cite>.
 * If you want to include multiple references in one place, that is OK, too.  Just separate them with spaces in one pair of <tt><nowiki><cite></nowiki></tt> tags, like this:  <cite>He1999 Comfort2007</cite>.
@@ Line 64: / Line 63: @@
 #Comfort2007 pmid=17323919
 #He1999 pmid=9312086
-#StickWillamsCarbohydrates isbn=978-0-240-52118-3
+#StickWillams2009 isbn=978-0-240-52118-3
 #Sinnott1990 Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. [http://dx.doi.org/10.1021/cr00105a006 DOI: 10.1021/cr00105a006]
 </biblio>

← Older revision		Revision as of 12:37, 22 February 2010
Line 70:		Line 70:

	== Using EndNote for formatting references in ''CAZypedia'' ==		== Using EndNote for formatting references in ''CAZypedia'' ==
−	It is in fact possible to use the reference software program EndNote to format references in a ''CAZypedia'' page. However, this method is not generally recommended, and should be attempted by experienced wiki users. If you feel you belong to this category and want to try using EndNote, see the specific instructions [[Help:References/EndNote\|here]].	+	It is in fact possible to use the reference software program EndNote to format references in a ''CAZypedia'' page. However, this method is not generally recommended, and should be attempted by experienced wiki users only. If you feel you belong to this category and want to try using EndNote, see the specific instructions [[Help:References/EndNote\|here]].