Polysaccharide Lyase Family 32 - Revision history

Harry Brumer at 23:42, 1 October 2024

2024-10-01T23:42:09Z

Harry Brumer at 23:40, 1 October 2024

2024-10-01T23:40:55Z

Harry Brumer: Added Deleted Family status and table

2024-10-01T23:38:55Z

Added Deleted Family status and table

Harry Brumer at 23:36, 1 October 2024

2024-10-01T23:36:49Z

Marie-Line Garron at 15:31, 23 August 2024

2024-08-23T15:31:23Z

Marie-Line Garron at 15:30, 23 August 2024

2024-08-23T15:30:18Z

Marie-Line Garron at 15:15, 23 August 2024

2024-08-23T15:15:57Z

Marie-Line Garron at 15:14, 23 August 2024

2024-08-23T15:14:58Z

Harry Brumer: Text replacement - "\^\^\^(.*)\^\^\^" to "$1"

2021-12-18T21:15:22Z

Text replacement - "\^\^\^(.*)\^\^\^" to "$1"

Harry Brumer at 01:06, 13 June 2020

2020-06-13T01:06:47Z

@@ Line 8: / Line 8: @@
 === PL32 is a deleted family ===
-The PL32 family was created following the functional characterization of the ORF “HMPREF1071_02769” from ''Bacteroides salyersiae ''CL02T12C01 (EIY62149.1), which showed endo-mannuronan lyase activity ([https://www.enzyme-database.org/query.php?ec=4.2.2.3 EC 4.2.2.3]) <cite>Helbert2019</cite>. Shortly afterwards, the sequence was <u>'''reclassified'''</u> as  [http://www.cazy.org/PL0.html PL_nc]  on the basis of structural modelling revealing that the catalytic domain was restricted to the N-terminal domain <cite>Drula2022</cite>. The small number of sequences and the proximity to the [[PL14]] and [[PL36]] families do not allow the creation of a new PL family.
+The PL32 family was created following the functional characterization of the ORF “HMPREF1071_02769” from ''Bacteroides salyersiae ''CL02T12C01 (EIY62149.1), which showed endo-mannuronan lyase activity ([{{EClink}}4.2.2.3 EC 4.2.2.3]) <cite>Helbert2019</cite>. Shortly afterwards, the sequence was <u>'''reclassified'''</u> as  [http://www.cazy.org/PL0.html PL_nc]  on the basis of structural modelling revealing that the catalytic domain was restricted to the N-terminal domain <cite>Drula2022</cite>. The small number of sequences and the proximity to the [[PL14]] and [[PL36]] families do not allow the creation of a new PL family.
 == References ==

@@ Line 7: / Line 7: @@
 ----
+=== PL32 is a deleted family ===
 The PL32 family was created following the functional characterization of the ORF “HMPREF1071_02769” from ''Bacteroides salyersiae ''CL02T12C01 (EIY62149.1), which showed endo-mannuronan lyase activity ([https://www.enzyme-database.org/query.php?ec=4.2.2.3 EC 4.2.2.3]) <cite>Helbert2019</cite>. Shortly afterwards, the sequence was <u>'''reclassified'''</u> as  [http://www.cazy.org/PL0.html PL_nc]  on the basis of structural modelling revealing that the catalytic domain was restricted to the N-terminal domain <cite>Drula2022</cite>. The small number of sequences and the proximity to the [[PL14]] and [[PL36]] families do not allow the creation of a new PL family.

← Older revision		Revision as of 23:38, 1 October 2024
Line 18:		Line 18:

	</biblio>		</biblio>
		+	<!-- The data in the table below should be updated by the Author/Curator according to current information on the family -->
		+	{\| {{Prettytable}}
		+	\|-
		+	\|{{Hl2}} colspan="2" align="center" \|'''CAZy DB links'''
		+	\|-
		+	\| colspan="2" \|{{CAZyDBlink}}PL32.html
		+	\|}
		+	<!-- This is the end of the table -->

	[[Category:Polysaccharide Lyase Families\|PL032]]		[[Category:Polysaccharide Lyase Families\|PL032]]

@@ Line 1: / Line 1: @@
 <!-- RESPONSIBLE CURATORS: Please replace the {{UnderConstruction}} tag below with {{CuratorApproved}} when the page is ready for wider public consumption -->
 {{CuratorApproved}}
 * [[Author]]: [[User:Marie-Line Garron|Marie-Line Garron]]
 * [[Responsible Curator]]:  [[User:Marie-Line Garron|Marie-Line Garron]]
@@ Line 7: / Line 9: @@
 == Substrate specificities ==
-The PL32 family was created following the functional characterization of the ORF “HMPREF1071_02769” from ''Bacteroides salyersiae ''CL02T12C01 (EIY62149.1), which showed endo-mannuronan lyase activity ([https://www.enzyme-database.org/query.php?ec=4.2.2.3 EC 4.2.2.3]) <cite>Helbert2019</cite>. Shortly afterwards, the sequence was <u>'''reclassified'''</u> as  [http://www.cazy.org/PL0.html PL_nc]  on the basis of structural modelling revealing that the catalytic domain was restricted to the N-terminal domain <cite>Drula2022</cite>. The small number of sequences and the proximity to the PL14 and PL36 families do not allow the creation of a new PL family.
+The PL32 family was created following the functional characterization of the ORF “HMPREF1071_02769” from ''Bacteroides salyersiae ''CL02T12C01 (EIY62149.1), which showed endo-mannuronan lyase activity ([https://www.enzyme-database.org/query.php?ec=4.2.2.3 EC 4.2.2.3]) <cite>Helbert2019</cite>. Shortly afterwards, the sequence was <u>'''reclassified'''</u> as  [http://www.cazy.org/PL0.html PL_nc]  on the basis of structural modelling revealing that the catalytic domain was restricted to the N-terminal domain <cite>Drula2022</cite>. The small number of sequences and the proximity to the [[PL14]] and [[PL36]] families do not allow the creation of a new PL family.
 == References ==

@@ Line 1: / Line 1: @@
 <!-- RESPONSIBLE CURATORS: Please replace the {{UnderConstruction}} tag below with {{CuratorApproved}} when the page is ready for wider public consumption -->
-{{UnderConstruction}}
+{{CuratorApproved}}
 * [[Author]]: [[User:Marie-Line Garron|Marie-Line Garron]]
 * [[Responsible Curator]]:  [[User:Marie-Line Garron|Marie-Line Garron]]

@@ Line 4: / Line 4: @@
 * [[Responsible Curator]]:  [[User:Marie-Line Garron|Marie-Line Garron]]
 ----
 == Substrate specificities ==
-Content is to be added here.
+The PL32 family was created following the functional characterization of the ORF “HMPREF1071_02769” from ''Bacteroides salyersiae ''CL02T12C01 (EIY62149.1), which showed endo-mannuronan lyase activity ([https://www.enzyme-database.org/query.php?ec=4.2.2.3 EC 4.2.2.3]) <cite>Helbert2019</cite>. Shortly afterwards, the sequence was <u>'''reclassified'''</u> as PL_nc on the basis of structural modelling revealing that the catalytic domain was restricted to the N-terminal domain ([http://www.cazy.org/PL0.html PL_nc])  <cite>Drula2022</cite>. The small number of sequences and the proximity to the PL14 and PL36 families do not allow the creation of a new PL family.
-In the meantime, please see these references for an essential introduction to the CAZy classification system: <cite>DaviesSinnott2008 Cantarel2009</cite>.
+== References ==
+<biblio>
-== Kinetics and Mechanism ==
+#Helbert2019 pmid=30850540
-== Family Firsts ==
+#Drula2022 pmid=34850161
 </biblio>
 [[Category:Polysaccharide Lyase Families|PL032]]

← Older revision		Revision as of 01:06, 13 June 2020
Line 59:		Line 59:
	</biblio>		</biblio>

−	[[Category:~~Glycoside Hydrolase~~ Families\|PL032]]	+	[[Category:Polysaccharide Lyase Families\|PL032]]