Polysaccharide Lyase Family 34 - Revision history

Harry Brumer: Fixed CAZy link in table

2024-10-01T23:46:14Z

Fixed CAZy link in table

Marie-Line Garron at 15:32, 23 August 2024

2024-08-23T15:32:36Z

Marie-Line Garron at 15:25, 23 August 2024

2024-08-23T15:25:36Z

Harry Brumer: Text replacement - "\^\^\^(.*)\^\^\^" to "$1"

2021-12-18T21:17:04Z

Text replacement - "\^\^\^(.*)\^\^\^" to "$1"

Harry Brumer at 01:06, 13 June 2020

2020-06-13T01:06:25Z

Harry Brumer: Created page with " {{UnderConstruct..."

2020-06-13T01:03:46Z

Created page with " {{UnderConstruct..."

New page

{{UnderConstruction}}
* [[Author]]: ^^^Marie-Line Garron^^^
* [[Responsible Curator]]: ^^^Marie-Line Garron^^^
----


<div style="float:right">
{| {{Prettytable}}
|-
|{{Hl2}} colspan="2" align="center" |'''Polysaccharide Lyase Family PL33'''
|-
|'''3D Structure'''
|
|-
|'''Mechanism'''
|
|-
|'''Charge neutraliser'''
|
|-
|'''Active site residues'''
|
|-
|{{Hl2}} colspan="2" align="center" |'''CAZy DB link'''
|-
| colspan="2" |{{CAZyDBlink}}PL33.html
|}
</div>


== Substrate specificities ==
Content is to be added here.

Authors may get an idea of what to put in each field from ''Curator Approved'' [[Polysaccharide Lyase Families]]. ''(TIP: Right click with your mouse and open this link in a new browser window...)''

In the meantime, please see these references for an essential introduction to the CAZy classification system: <cite>DaviesSinnott2008 Cantarel2009</cite>.

== Kinetics and Mechanism ==
Content is to be added here.

== Catalytic Residues ==
Content is to be added here.

== Three-dimensional structures ==
Content is to be added here.

== Family Firsts ==
;First stereochemistry determination: Content is to be added here.
;First catalytic nucleophile identification: Content is to be added here.
;First general acid/base residue identification: Content is to be added here.
;First 3-D structure: Content is to be added here.

== References ==
<biblio>
#Cantarel2009 pmid=18838391
#DaviesSinnott2008 Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. ''The Biochemist'', vol. 30, no. 4., pp. 26-32. [https://doi.org/10.1042/BIO03004026 Download PDF version].
</biblio>

[[Category:Glycoside Hydrolase Families|PL034]]

@@ Line 25: / Line 25: @@
 |{{Hl2}} colspan="2" align="center" |'''CAZy DB link'''
 |-
-| colspan="2" |{{CAZyDBlink}}PL33.html
+| colspan="2" |{{CAZyDBlink}}PL34.html
 |}
 </div>
@@ Line 32: / Line 32: @@
 == Substrate specificities ==
-PL34 is a small family (28 sequences), mainly bacterial, with only one sequence belonging to the metazoan ''Knipowitschia caucasica'' ([http://www.cazy.org/PL34.html PL34])<cite>Drula2022</cite>. The founding member of family 34, and the only one characterized, belongs to OPIT5_18480 of Opitutaceae bacterium TAV5 (AHF91913.1). This enzyme presents an activity against alginate (EC 4.2.2.-)  <cite>Helbert2019</cite>.
+PL34 is a small family (28 sequences), mainly bacterial, with only one sequence belonging to the metazoan ''Knipowitschia caucasica''. The founding member of family 34, and the only one characterized, belongs to OPIT5_18480 of Opitutaceae bacterium TAV5 (AHF91913.1). This enzyme presents an activity against alginate (EC 4.2.2.-)  <cite>Helbert2019</cite>.
 == Kinetics and Mechanism ==
@@ Line 51: / Line 51: @@
 == References ==
 <biblio>
 #Helbert2019 pmid=30850540
 </biblio>
 [[Category:Polysaccharide Lyase Families|PL034]]

← Older revision		Revision as of 01:06, 13 June 2020
Line 59:		Line 59:
	</biblio>		</biblio>

−	[[Category:~~Glycoside Hydrolase~~ Families\|PL034]]	+	[[Category:Polysaccharide Lyase Families\|PL034]]

@@ Line 1: / Line 1: @@
 <!-- RESPONSIBLE CURATORS: Please replace the {{UnderConstruction}} tag below with {{CuratorApproved}} when the page is ready for wider public consumption -->
-{{UnderConstruction}}
+{{CuratorApproved}}
 * [[Author]]: [[User:Marie-Line Garron|Marie-Line Garron]]
 * [[Responsible Curator]]:  [[User:Marie-Line Garron|Marie-Line Garron]]

@@ Line 32: / Line 32: @@
 == Substrate specificities ==
-Content is to be added here.
+PL34 is a small family (28 sequences), mainly bacterial, with only one sequence belonging to the metazoan ''Knipowitschia caucasica'' ([http://www.cazy.org/PL34.html PL34])<cite>Drula2022</cite>. The founding member of family 34, and the only one characterized, belongs to OPIT5_18480 of Opitutaceae bacterium TAV5 (AHF91913.1). This enzyme presents an activity against alginate (EC 4.2.2.-)  <cite>Helbert2019</cite>.
 == Kinetics and Mechanism ==
-Content is to be added here.
+Not determined
 == Catalytic Residues ==
-Content is to be added here.
+Not determined
 == Three-dimensional structures ==
-Content is to be added here.
+Unsolved
 == Family Firsts ==
-;First stereochemistry determination: Content is to be added here.
+;First description of catalytic activity: Alginate lyase was the first activity discovered for the family PL34  <cite>Helbert2019</cite>.
-;First catalytic nucleophile identification: Content is to be added here.
+;First First charge neutralizer identification: To be determined
-;First general acid/base residue identification: Content is to be added here.
+;First Brønstead acid and base residue identification: To be determined
-;First 3-D structure: Content is to be added here.
+;First 3-D structure: To be determined
 == References ==
 <biblio>
-#Cantarel2009 pmid=18838391
+#Drula2022 pmid=34850161
-#DaviesSinnott2008 Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. ''The Biochemist'', vol. 30, no. 4., pp. 26-32. [https://doi.org/10.1042/BIO03004026 Download PDF version].
+#Helbert2019 pmid=30850540
 </biblio>
 [[Category:Polysaccharide Lyase Families|PL034]]