Polysaccharide Lyase Family 38 - Revision history

Tobias Tandrup at 10:42, 4 June 2024

2024-06-04T10:42:41Z

Tobias Tandrup at 10:38, 4 June 2024

2024-06-04T10:38:02Z

Tobias Tandrup at 09:52, 4 June 2024

2024-06-04T09:52:18Z

Tobias Tandrup at 09:21, 4 June 2024

2024-06-04T09:21:16Z

Tobias Tandrup at 08:40, 4 June 2024

2024-06-04T08:40:25Z

Tobias Tandrup at 15:06, 3 June 2024

2024-06-03T15:06:12Z

Tobias Tandrup at 15:03, 3 June 2024

2024-06-03T15:03:44Z

Tobias Tandrup at 14:58, 3 June 2024

2024-06-03T14:58:51Z

Tobias Tandrup at 14:58, 3 June 2024

2024-06-03T14:58:08Z

Harry Brumer: Created page with " {{UnderConstruct..."

2024-01-23T16:31:22Z

Created page with " {{UnderConstruct..."

New page

{{UnderConstruction}}
* [[Author]]: [[User:Tobias Tandrup|Tobias Tandrup]]
* [[Responsible Curator]]: [[User:Birte Svensson|Birte Svensson]]
----


<div style="float:right">
{| {{Prettytable}}
|-
|{{Hl2}} colspan="2" align="center" |'''Polysaccharide Lyase Family 38'''
|-
|'''3D structure'''
|
|-
|'''Mechanism'''
|
|-
|'''Charge neutralizer'''
|
|-
|'''Active site residues'''
|known/unknown
|-
|{{Hl2}} colspan="2" align="center" |'''CAZy DB link'''
|-
| colspan="2" |{{CAZyDBlink}}PL38.html
|}
</div>


== Substrate specificities ==
Content is to be added here.

Authors may get an idea of what to put in each field from ''Curator Approved'' [[Polysaccharide Lyase Families]]. ''(TIP: Right click with your mouse and open this link in a new browser window...)''

In the meantime, please see these references for an essential introduction to the CAZy classification system: <cite>DaviesSinnott2008 Cantarel2009</cite>.

== Kinetics and Mechanism ==
Content is to be added here.

== Catalytic Residues ==
Content is to be added here.

== Three-dimensional structures ==
Content is to be added here.

== Family Firsts ==
;First stereochemistry determination: Content is to be added here.
;First catalytic nucleophile identification: Content is to be added here.
;First general acid/base residue identification: Content is to be added here.
;First 3-D structure: Content is to be added here.

== References ==
<biblio>
#Cantarel2009 pmid=18838391
#DaviesSinnott2008 Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. ''The Biochemist'', vol. 30, no. 4., pp. 26-32. [https://doi.org/10.1042/BIO03004026 DOI:10.1042/BIO03004026].
</biblio>


[[Category:Polysaccharide Lyase Families|PL038]]

@@ Line 50: / Line 50: @@
 == Family Firsts ==
-;First description of catalytic activity: (1,4)-β-D-glucuronan activity by ''Brevundimonas sp. SH203'' cellouronate lyase (CUL-I) <cite> kikuchi2019 </cite>.
+;First description of catalytic activity:
-Sodium-alginate, poly-mannuronate and poly-guluronate activity by ''Agarivorans sp. B2Z047'' alginate lyase (Aly38A) <cite> Sun2022 </cite>.
+*(1,4)-β-D-glucuronan activity by ''Brevundimonas sp. SH203'' cellouronate lyase (CUL-I) <cite> kikuchi2019 </cite>.
 ;First catalytic base/acid: Content is to be added here.
 ;First charge neutralizer: Content is to be added here.

@@ Line 50: / Line 50: @@
 == Family Firsts ==
 ;First description of catalytic activity: (1,4)-β-D-glucuronan activity by ''Brevundimonas sp. SH203'' cellouronate lyase (CUL-I) <cite> kikuchi2019 </cite>.
-;First catalytic nucleophile identification: Content is to be added here.
+Sodium-alginate, poly-mannuronate and poly-guluronate activity by ''Agarivorans sp. B2Z047'' alginate lyase (Aly38A) <cite> Sun2022 </cite>.
-;First general acid/base residue identification: Content is to be added here.
+;First catalytic base/acid: Content is to be added here.
 ;First 3-D structure: ''Bacteroides ovatus ATCC 8483'' PL38 (PDB [https://www.rcsb.org/structure/3NFV 3NFV] and [https://www.rcsb.org/structure/3NNB 3NNB]), published by the Joint Center for Structural Genomics ([http://www.jcsg.org JCSG]) [No associated publication].

@@ Line 13: / Line 13: @@
 |'''3D structure'''
+|
-[https://www.rcsb.org/structure/3NFV 3NFV]
+( α / α )<sub>7</sub> barrel
 |-
 |'''Mechanism'''

@@ Line 32: / Line 32: @@
 <!-- This is the end of the table -->
 == Substrate specificities ==
 Content is to be added here.
 == Kinetics and Mechanism ==

@@ Line 19: / Line 19: @@
 |'''Mechanism'''
+|
 |-
 |'''Charge neutralizer'''
@@ Line 58: / Line 59: @@
 == References ==
 <biblio>
-#Ronne2023 pmid=37791757
 #kikuchi2019 pmid=31546007
 #Pilgaard2022 pmid=34705548
 #Sun2022 pmid=35447927
 </biblio>
 <!-- Do not delete this Category tag -->
 [[Category:Polysaccharide Lyase Families|PL038]]

@@ Line 24: / Line 24: @@
 |-
 |'''Active site residues'''
-|known/unknown
+|unknown
 |-
 |{{Hl2}} colspan="2" align="center" |'''CAZy DB link'''