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Difference between revisions of "Glycoside Hydrolase Families"

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This pages lists all the Glycoside Hydrolase (GH) Family pages in ''CAZypedia'' that have been given [[:Category:Curator approved|Curator Approved]] status, as well as those that are currently [[:Category:Under construction|under construction]].
 
This pages lists all the Glycoside Hydrolase (GH) Family pages in ''CAZypedia'' that have been given [[:Category:Curator approved|Curator Approved]] status, as well as those that are currently [[:Category:Under construction|under construction]].
  
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The [[Lexicon]] entry [[Glycoside Hydrolases]] contains an introduction and overview to this class of enzymes. The classification mirrors that of the [http://www.cazy.org CAZy database] <cite>Cantarel2009</cite>, which itself is based on the sequence-based families of glycoside hydrolases as described in <cite>Henrissat1991 Henrissat1993 Henrissat1996 Davies1995 Henrissat1997</cite>.
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The [[Lexicon]] entry [[Glycoside Hydrolases]] contains an introduction and overview to this class of enzymes. The classification mirrors that of the [http://www.cazy.org CAZy database] <cite>#DaviesSinnott2008 Cantarel2009 Lombard2013</cite>, which itself is based on the sequence-based families of glycoside hydrolases as described in <cite>Henrissat1991 Henrissat1993 Henrissat1996 Davies1995 Henrissat1997</cite>.
 
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#Davies1995 pmid=8535779
 
#Davies1995 pmid=8535779
 
#Henrissat1997 pmid=9345621
 
#Henrissat1997 pmid=9345621
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#DaviesSinnott2008 Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. ''Biochem. J.'' (A BJ Classics review, online only). [http://dx.doi.org/10.1042/BJ20080382 DOI: 10.1042/BJ20080382]
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#Lombard2013 pmid=24270786
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</biblio>
 
</biblio>

Revision as of 20:40, 27 November 2013

This pages lists all the Glycoside Hydrolase (GH) Family pages in CAZypedia that have been given Curator Approved status, as well as those that are currently under construction.

The Lexicon entry Glycoside Hydrolases contains an introduction and overview to this class of enzymes. The classification mirrors that of the CAZy database [1, 2, 3], which itself is based on the sequence-based families of glycoside hydrolases as described in [4, 5, 6, 7, 8].

Curator Approved

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These pages have been approved by the Responsible Curator as essentially complete. CAZypedia is a living document, so further improvement of these pages is still possible; please see the individual pages for more information.

There are currently 139 Curator approved Glycoside Hydrolase (GH) Family pages in CAZypedia.

Under construction

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These pages are currently under construction in CAZypedia. As such, the Responsible Curator has deemed that the page's content is not quite up to CAZypedia's standards for full public consumption. All information on these pages should therefore be considered to be under revision and may be subject to major changes.

There are currently 9 Glycoside Hydrolase Family pages under construction in CAZypedia.

Unassigned pages

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The following Unassigned pages are currently lacking a Responsible Curator and one or more Authors. If you are an expert on any of these families and would like to help us improve CAZypedia by getting involved with the production and maintenance of the corresponding page(s), please contact a member of the Board of Curators directly, or via this form.

There are currently 41 Glycoside Hydrolase Family pages in CAZypedia that have not been assigned to a Responsible Curator.

Deleted families

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The following families have been deleted from the CAZy database. Please see the individual CAZypedia pages and links to the corresponding CAZy DB pages for specific explanations.

There are currently 8 pages in CAZypedia that describe Glycoside Hydrolase families deleted from the CAZy DB.

References

  1. Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. Biochem. J. (A BJ Classics review, online only). DOI: 10.1042/BJ20080382

    [DaviesSinnott2008]
  2. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, and Henrissat B. (2009). The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 2009;37(Database issue):D233-8. DOI:10.1093/nar/gkn663 | PubMed ID:18838391 [Cantarel2009]
  3. Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, and Henrissat B. (2014). The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res. 2014;42(Database issue):D490-5. DOI:10.1093/nar/gkt1178 | PubMed ID:24270786 [Lombard2013]
  4. Henrissat B (1991). A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J. 1991;280 ( Pt 2)(Pt 2):309-16. DOI:10.1042/bj2800309 | PubMed ID:1747104 [Henrissat1991]
  5. Henrissat B and Bairoch A. (1993). New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J. 1993;293 ( Pt 3)(Pt 3):781-8. DOI:10.1042/bj2930781 | PubMed ID:8352747 [Henrissat1993]
  6. Henrissat B and Bairoch A. (1996). Updating the sequence-based classification of glycosyl hydrolases. Biochem J. 1996;316 ( Pt 2)(Pt 2):695-6. DOI:10.1042/bj3160695 | PubMed ID:8687420 [Henrissat1996]
  7. Davies G and Henrissat B. (1995). Structures and mechanisms of glycosyl hydrolases. Structure. 1995;3(9):853-9. DOI:10.1016/S0969-2126(01)00220-9 | PubMed ID:8535779 [Davies1995]
  8. Henrissat B and Davies G. (1997). Structural and sequence-based classification of glycoside hydrolases. Curr Opin Struct Biol. 1997;7(5):637-44. DOI:10.1016/s0959-440x(97)80072-3 | PubMed ID:9345621 [Henrissat1997]

All Medline abstracts: PubMed

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