https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&feed=atom&action=history
User:Nicole Koropatkin - Revision history
2024-03-29T06:50:19Z
Revision history for this page on the wiki
MediaWiki 1.35.10
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11681&oldid=prev
Harry Brumer at 16:19, 6 September 2017
2017-09-06T16:19:54Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:19, 6 September 2017</td>
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<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:Nicole_Dec2016_small.jpg|200px|right]]Nicole Koropatkin received her PhD in Biochemistry from the University of Wisconsin in 2004. Trained in structural enzymology in the lab of Hazel Holden, her graduate work focused on the enymes involved in O-antigen deoxysugar biosynthesis in Salmonella typhi. After finishing her training, she moved to the lab of Thomas Smith at the Donald Danforth Plant Science Center in St. Louis. She received an NRSA to determine the structural basis for nitrate and bicarbonate discrimination within the ABC transport systems of Synechocystis PCC 6803. After completing this study, she teamed up with Eric Martens from the Jeffrey Gordon lab at Washington University in St. Louis in order to investigate the structures of the novel proteins encoded within Bacteroidetes polysaccharide utilization loci. In 2009 she moved to the University of Michigan Medical School. She is currently an [https://medicine.umich.edu/dept/microbiology-immunology/nicole-m-koropatkin-phd Assistant Professor in the Microbiology and Immunology department]. The <del class="diffchange diffchange-inline">[https://www.umms.med.umich.edu/pibsfacsearch/facultyPage.do?facUniqname=nkoropat </del>Koropatkin lab<del class="diffchange diffchange-inline">] </del>studies the structural biology of glycan capture by a variety of human gut bacteria.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:Nicole_Dec2016_small.jpg|200px|right]]Nicole Koropatkin received her PhD in Biochemistry from the University of Wisconsin in 2004. Trained in structural enzymology in the lab of Hazel Holden, her graduate work focused on the enymes involved in O-antigen deoxysugar biosynthesis in Salmonella typhi. After finishing her training, she moved to the lab of Thomas Smith at the Donald Danforth Plant Science Center in St. Louis. She received an NRSA to determine the structural basis for nitrate and bicarbonate discrimination within the ABC transport systems of Synechocystis PCC 6803. After completing this study, she teamed up with Eric Martens from the Jeffrey Gordon lab at Washington University in St. Louis in order to investigate the structures of the novel proteins encoded within Bacteroidetes polysaccharide utilization loci. In 2009 she moved to the <ins class="diffchange diffchange-inline">[https://www.umms.med.umich.edu/pibsfacsearch/facultyPage.do?facUniqname=nkoropat </ins>University of Michigan Medical School<ins class="diffchange diffchange-inline">]</ins>. She is currently an [https://medicine.umich.edu/dept/microbiology-immunology/nicole-m-koropatkin-phd Assistant Professor in the Microbiology and Immunology department]. The <ins class="diffchange diffchange-inline"> </ins>Koropatkin lab studies the structural biology of glycan capture by a variety of human gut bacteria.</div></td></tr>
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Harry Brumer
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11680&oldid=prev
Harry Brumer: added some external links
2017-09-06T16:16:57Z
<p>added some external links</p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:16, 6 September 2017</td>
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<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:Nicole_Dec2016_small.jpg|200px|right]]Nicole Koropatkin received her PhD in Biochemistry from the University of Wisconsin in 2004. Trained in structural enzymology in the lab of Hazel Holden, her graduate work focused on the enymes involved in O-antigen deoxysugar biosynthesis in Salmonella typhi. After finishing her training, she moved to the lab of Thomas Smith at the Donald Danforth Plant Science Center in St. Louis. She received an NRSA to determine the structural basis for nitrate and bicarbonate discrimination within the ABC transport systems of Synechocystis PCC 6803. After completing this study, she teamed up with Eric Martens from the Jeffrey Gordon lab at Washington University in St. Louis in order to investigate the structures of the novel proteins encoded within Bacteroidetes polysaccharide utilization loci. In 2009 she moved to the University of Michigan Medical School. She is currently an Assistant Professor in the Microbiology and Immunology department. The Koropatkin lab studies the structural biology of glycan capture by a variety of human gut bacteria.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:Nicole_Dec2016_small.jpg|200px|right]]Nicole Koropatkin received her PhD in Biochemistry from the University of Wisconsin in 2004. Trained in structural enzymology in the lab of Hazel Holden, her graduate work focused on the enymes involved in O-antigen deoxysugar biosynthesis in Salmonella typhi. After finishing her training, she moved to the lab of Thomas Smith at the Donald Danforth Plant Science Center in St. Louis. She received an NRSA to determine the structural basis for nitrate and bicarbonate discrimination within the ABC transport systems of Synechocystis PCC 6803. After completing this study, she teamed up with Eric Martens from the Jeffrey Gordon lab at Washington University in St. Louis in order to investigate the structures of the novel proteins encoded within Bacteroidetes polysaccharide utilization loci. In 2009 she moved to the University of Michigan Medical School. She is currently an <ins class="diffchange diffchange-inline">[https://medicine.umich.edu/dept/microbiology-immunology/nicole-m-koropatkin-phd </ins>Assistant Professor in the Microbiology and Immunology department<ins class="diffchange diffchange-inline">]</ins>. The <ins class="diffchange diffchange-inline">[https://www.umms.med.umich.edu/pibsfacsearch/facultyPage.do?facUniqname=nkoropat </ins>Koropatkin lab<ins class="diffchange diffchange-inline">] </ins>studies the structural biology of glycan capture by a variety of human gut bacteria.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
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Harry Brumer
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11678&oldid=prev
Nicole Koropatkin at 14:08, 6 September 2017
2017-09-06T14:08:25Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 14:08, 6 September 2017</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Nicole_Dec2016_small.jpg|200px|right]]Nicole Koropatkin received her PhD in Biochemistry from the University of Wisconsin in 2004. Trained in structural enzymology in the lab of Hazel Holden, her graduate work focused on the enymes involved in O-antigen deoxysugar biosynthesis in Salmonella typhi. After finishing her training, she moved to the lab of Thomas Smith at the Donald Danforth Plant Science Center in St. Louis. She received an NRSA to determine the structural basis for nitrate and bicarbonate discrimination within the ABC transport systems of Synechocystis PCC 6803. After completing this study, she teamed up with Eric Martens from the Jeffrey Gordon lab at Washington University in St. Louis in order to investigate the structures of the novel proteins encoded within Bacteroidetes polysaccharide utilization loci. In 2009 she moved to the University of Michigan Medical School. She is currently an Assistant Professor in the Microbiology and Immunology department. The Koropatkin lab studies the structural biology of glycan capture by a variety of human gut bacteria.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Nicole_Dec2016_small.jpg|200px|right]]Nicole Koropatkin received her PhD in Biochemistry from the University of Wisconsin in 2004. Trained in structural enzymology in the lab of Hazel Holden, her graduate work focused on the enymes involved in O-antigen deoxysugar biosynthesis in Salmonella typhi. After finishing her training, she moved to the lab of Thomas Smith at the Donald Danforth Plant Science Center in St. Louis. She received an NRSA to determine the structural basis for nitrate and bicarbonate discrimination within the ABC transport systems of Synechocystis PCC 6803. After completing this study, she teamed up with Eric Martens from the Jeffrey Gordon lab at Washington University in St. Louis in order to investigate the structures of the novel proteins encoded within Bacteroidetes polysaccharide utilization loci. In 2009 she moved to the University of Michigan Medical School. She is currently an Assistant Professor in the Microbiology and Immunology department. The Koropatkin lab studies the structural biology of glycan capture by a variety of human gut bacteria.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">== Selected Citations ==</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Koropatkin N, Martens EC, Gordon JI, Smith TJ: Structure of a SusD homologue, BT1043, involved in mucin O-glycan utilization in a prominent human gut symbiont. Biochemistry 48(7): 1532-1542, 2009. [Pubmed ID: 18611383][https://www.ncbi.nlm.nih.gov/pubmed/18611383]</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Martens EC, Koropatkin NM, Smith TJ, Gordon JI: Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J. Biol. Chem. 284(37): 24673-24677, 2009.[Pubmed ID: 19553672] [https://www.ncbi.nlm.nih.gov/pubmed/19553672]</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Koropatkin NM, Smith TJ: SusG: a unique cell-membrane-associated alpha-amylase from a prominent human gut symbiont targets complex starch molecules. Structure 18(2): 200-215, 2010.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Cameron EA, Kwiatkowski KJ, Lee BH, Hamaker BR, Koropatkin NM, Martens EC: Multifunctional nutrient-binding proteins adapt human symbiotic bacteria for glycan competition in the gut by separately promoting enhanced sensing and catalysis. mBio 5(5): e01441-14, 2014.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Karunatilaka KS, Cameron EA, Martens EC, Koropatkin NM, Biteen JS: Superresolution imaging captures carbohydrate utilization dynamics in human gut symbionts. mBio 5(6): e02172, 2014.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Cockburn DW, Orlovsky NI, Foley MH, Kwiatkowski KJ, Bahr CM, Maynard M, Demeler B, Koropatkin NM: Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale. Mol. Microbiol. 95(2): 209-30, 2015.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Foley MH, Cockburn DW, Koropatkin NM: The Sus operon: a model system for starch uptake by the human gut Bacteroidetes. Cell Mol Life Sci: 2016.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Tauzin AS, Kwiatkowski KJ, Orlovsky NI, Smith CJ, Creagh AL, Haynes CA, Wawrzak Z, Brumer H, Koropatkin NM: Molecular dissection of xyloglucan recognition in a prominent human gut symbiont. mBio 7(2): e02134-15, 2016.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Larsbrink J, Zhu Y, Kharade SS, Kwiatkowski KJ, Eijsink VG, Koropatkin NM, McBride MJ, Pope PB. A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin. Biotechnol Biofuels. 9:260, 2016.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Cockburn DW, Koropatkin NM. Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease. J Mol Biol. Aug 14;428(16):3230-5, 2016</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Wefers D, Cavalcante JJV, Schendel RR, Deveryshetty J, Wang K, Wawrzak Z, Mackie R, Koropatkin N, Cann I. Biochemical assignment of two cryptic proteins in Bacteroides intestinalis as bifunctional esterases and their synergistic activities with cognate xylan degrading enzymes. J Mol Biol. 429 (16):2509-2527, 2017.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Selected Citations ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Selected Citations ==</div></td></tr>
</table>
Nicole Koropatkin
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11677&oldid=prev
Nicole Koropatkin at 14:08, 6 September 2017
2017-09-06T14:08:08Z
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Martens2009 pmid=19553672</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Martens2009 pmid=19553672</div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#Cameron2014 pmid=25205092</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--- Note: Do not remove this Category tag ---></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--- Note: Do not remove this Category tag ---></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Contributors|Koropatkin, Nicole]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Contributors|Koropatkin, Nicole]]</div></td></tr>
</table>
Nicole Koropatkin
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11668&oldid=prev
Harry Brumer: Fixed picture sizing
2017-08-28T21:15:03Z
<p>Fixed picture sizing</p>
<table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 21:15, 28 August 2017</td>
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<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[<del class="diffchange diffchange-inline">Image</del>: Nicole_Dec2016_small.jpg|<del class="diffchange diffchange-inline">thumb|widthpx</del>| ]]Nicole Koropatkin received her PhD in Biochemistry from the University of Wisconsin in 2004. Trained in structural enzymology in the lab of Hazel Holden, her graduate work focused on the enymes involved in O-antigen deoxysugar biosynthesis in Salmonella typhi. After finishing her training, she moved to the lab of Thomas Smith at the Donald Danforth Plant Science Center in St. Louis. She received an NRSA to determine the structural basis for nitrate and bicarbonate discrimination within the ABC transport systems of Synechocystis PCC 6803. After completing this study, she teamed up with Eric Martens from the Jeffrey Gordon lab at Washington University in St. Louis in order to investigate the structures of the novel proteins encoded within Bacteroidetes polysaccharide utilization loci. In 2009 she moved to the University of Michigan Medical School. She is currently an Assistant Professor in the Microbiology and Immunology department. The Koropatkin lab studies the structural biology of glycan capture by a variety of human gut bacteria.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[<ins class="diffchange diffchange-inline">File</ins>:Nicole_Dec2016_small.jpg|<ins class="diffchange diffchange-inline">200px</ins>|<ins class="diffchange diffchange-inline">right</ins>]]Nicole Koropatkin received her PhD in Biochemistry from the University of Wisconsin in 2004. Trained in structural enzymology in the lab of Hazel Holden, her graduate work focused on the enymes involved in O-antigen deoxysugar biosynthesis in Salmonella typhi. After finishing her training, she moved to the lab of Thomas Smith at the Donald Danforth Plant Science Center in St. Louis. She received an NRSA to determine the structural basis for nitrate and bicarbonate discrimination within the ABC transport systems of Synechocystis PCC 6803. After completing this study, she teamed up with Eric Martens from the Jeffrey Gordon lab at Washington University in St. Louis in order to investigate the structures of the novel proteins encoded within Bacteroidetes polysaccharide utilization loci. In 2009 she moved to the University of Michigan Medical School. She is currently an Assistant Professor in the Microbiology and Immunology department. The Koropatkin lab studies the structural biology of glycan capture by a variety of human gut bacteria.</div></td></tr>
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</table>
Harry Brumer
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11667&oldid=prev
Harry Brumer: Added Contributor Category tag
2017-08-28T21:13:48Z
<p>Added Contributor Category tag</p>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"><!--- Note: Do not remove this Category tag ---></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Category:Contributors|Koropatkin, Nicole]]</ins></div></td></tr>
</table>
Harry Brumer
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11666&oldid=prev
Harry Brumer: Two examples of references added automatically via PMID
2017-08-28T21:12:09Z
<p>Two examples of references added automatically via PMID</p>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Wefers D, Cavalcante JJV, Schendel RR, Deveryshetty J, Wang K, Wawrzak Z, Mackie R, Koropatkin N, Cann I. Biochemical assignment of two cryptic proteins in Bacteroides intestinalis as bifunctional esterases and their synergistic activities with cognate xylan degrading enzymes. J Mol Biol. 429 (16):2509-2527, 2017.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Wefers D, Cavalcante JJV, Schendel RR, Deveryshetty J, Wang K, Wawrzak Z, Mackie R, Koropatkin N, Cann I. Biochemical assignment of two cryptic proteins in Bacteroides intestinalis as bifunctional esterases and their synergistic activities with cognate xylan degrading enzymes. J Mol Biol. 429 (16):2509-2527, 2017.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">== Selected Citations ==</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"><biblio></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#Koropatkin2009 pmid=18611383</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#Martens2009 pmid=19553672</ins></div></td></tr>
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</table>
Harry Brumer
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11651&oldid=prev
Nicole Koropatkin: /* Selected Citations */
2017-08-23T16:03:33Z
<p><span dir="auto"><span class="autocomment">Selected Citations</span></span></p>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Koropatkin N, Martens EC, Gordon JI, Smith TJ: Structure of a SusD homologue, BT1043, involved in mucin O-glycan utilization in a prominent human gut symbiont. Biochemistry 48(7): 1532-1542, 2009. [Pubmed ID: 18611383][https://www.ncbi.nlm.nih.gov/pubmed/18611383]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Koropatkin N, Martens EC, Gordon JI, Smith TJ: Structure of a SusD homologue, BT1043, involved in mucin O-glycan utilization in a prominent human gut symbiont. Biochemistry 48(7): 1532-1542, 2009. [Pubmed ID: 18611383][https://www.ncbi.nlm.nih.gov/pubmed/18611383]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Martens EC, Koropatkin NM, Smith TJ, Gordon JI: Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J. Biol. Chem. 284(37): 24673-24677, 2009.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Martens EC, Koropatkin NM, Smith TJ, Gordon JI: Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J. Biol. Chem. 284(37): 24673-24677, 2009.<ins class="diffchange diffchange-inline">[Pubmed ID: 19553672] [https://www.ncbi.nlm.nih.gov/pubmed/19553672]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Koropatkin NM, Smith TJ: SusG: a unique cell-membrane-associated alpha-amylase from a prominent human gut symbiont targets complex starch molecules. Structure 18(2): 200-215, 2010.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Koropatkin NM, Smith TJ: SusG: a unique cell-membrane-associated alpha-amylase from a prominent human gut symbiont targets complex starch molecules. Structure 18(2): 200-215, 2010.</div></td></tr>
</table>
Nicole Koropatkin
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11650&oldid=prev
Nicole Koropatkin: /* Selected Citations */
2017-08-23T16:02:00Z
<p><span dir="auto"><span class="autocomment">Selected Citations</span></span></p>
<table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en-CA">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:02, 23 August 2017</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l4" >Line 4:</td>
<td colspan="2" class="diff-lineno">Line 4:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Selected Citations ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Selected Citations ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Koropatkin N, Martens EC, Gordon JI, Smith TJ: Structure of a SusD homologue, BT1043, involved in mucin O-glycan utilization in a prominent human gut symbiont. Biochemistry 48(7): 1532-1542, 2009. [Pubmed ID: 18611383][<del class="diffchange diffchange-inline">http://</del>https://www.ncbi.nlm.nih.gov/pubmed/18611383]</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Koropatkin N, Martens EC, Gordon JI, Smith TJ: Structure of a SusD homologue, BT1043, involved in mucin O-glycan utilization in a prominent human gut symbiont. Biochemistry 48(7): 1532-1542, 2009. [Pubmed ID: 18611383][https://www.ncbi.nlm.nih.gov/pubmed/18611383]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Martens EC, Koropatkin NM, Smith TJ, Gordon JI: Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J. Biol. Chem. 284(37): 24673-24677, 2009.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Martens EC, Koropatkin NM, Smith TJ, Gordon JI: Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J. Biol. Chem. 284(37): 24673-24677, 2009.</div></td></tr>
</table>
Nicole Koropatkin
https://www.cazypedia.org/index.php?title=User:Nicole_Koropatkin&diff=11649&oldid=prev
Nicole Koropatkin: /* Selected Citations */
2017-08-23T16:01:20Z
<p><span dir="auto"><span class="autocomment">Selected Citations</span></span></p>
<table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en-CA">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:01, 23 August 2017</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l4" >Line 4:</td>
<td colspan="2" class="diff-lineno">Line 4:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Selected Citations ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Selected Citations ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Koropatkin N, Martens EC, Gordon JI, Smith TJ: Structure of a SusD homologue, BT1043, involved in mucin O-glycan utilization in a prominent human gut symbiont. Biochemistry 48(7): 1532-1542, 2009.</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Koropatkin N, Martens EC, Gordon JI, Smith TJ: Structure of a SusD homologue, BT1043, involved in mucin O-glycan utilization in a prominent human gut symbiont. Biochemistry 48(7): 1532-1542, 2009. <ins class="diffchange diffchange-inline">[Pubmed ID: 18611383][http://https://www.ncbi.nlm.nih.gov/pubmed/18611383]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Martens EC, Koropatkin NM, Smith TJ, Gordon JI: Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J. Biol. Chem. 284(37): 24673-24677, 2009.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Martens EC, Koropatkin NM, Smith TJ, Gordon JI: Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J. Biol. Chem. 284(37): 24673-24677, 2009.</div></td></tr>
</table>
Nicole Koropatkin