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Difference between revisions of "User:Harry Brumer"

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Revision as of 10:02, 10 June 2007

This is the user page of Harry Brumer, Ph.D. I am an Associate Professor at the Royal Institute of Technology in Stockholm Sweden. Please see my academic home page for more information about my areas of interest.

Publication list

Below is a list of my publications available on PubMed. It is mainly here for personal use, as a demonstration of Biblio to handle references in CAZypedia. Note that, due to the incompleteness of PubMed, it does not cover my full publication list, which is available in its entirety here.

  1. Sundqvist G, Stenvall M, Berglund H, Ottosson J, and Brumer H. (2007). A general, robust method for the quality control of intact proteins using LC-ESI-MS. J Chromatogr B Analyt Technol Biomed Life Sci. 2007;852(1-2):188-94. DOI:10.1016/j.jchromb.2007.01.011 | PubMed ID:17267305 [1]
  2. Teeri TT, Brumer H 3rd, Daniel G, and Gatenholm P. (2007). Biomimetic engineering of cellulose-based materials. Trends Biotechnol. 2007;25(7):299-306. DOI:10.1016/j.tibtech.2007.05.002 | PubMed ID:17512068 [2]
  3. Nishikubo N, Awano T, Banasiak A, Bourquin V, Ibatullin F, Funada R, Brumer H, Teeri TT, Hayashi T, Sundberg B, and Mellerowicz EJ. (2007). Xyloglucan endo-transglycosylase (XET) functions in gelatinous layers of tension wood fibers in poplar--a glimpse into the mechanism of the balancing act of trees. Plant Cell Physiol. 2007;48(6):843-55. DOI:10.1093/pcp/pcm055 | PubMed ID:17504814 [3]
  4. Gloster TM, Ibatullin FM, Macauley K, Eklöf JM, Roberts S, Turkenburg JP, Bjørnvad ME, Jørgensen PL, Danielsen S, Johansen KS, Borchert TV, Wilson KS, Brumer H, and Davies GJ. (2007). Characterization and three-dimensional structures of two distinct bacterial xyloglucanases from families GH5 and GH12. J Biol Chem. 2007;282(26):19177-89. DOI:10.1074/jbc.M700224200 | PubMed ID:17376777 [4]
  5. Comfort DA, Bobrov KS, Ivanen DR, Shabalin KA, Harris JM, Kulminskaya AA, Brumer H, and Kelly RM. (2007). Biochemical analysis of Thermotoga maritima GH36 alpha-galactosidase (TmGalA) confirms the mechanistic commonality of clan GH-D glycoside hydrolases. Biochemistry. 2007;46(11):3319-30. DOI:10.1021/bi061521n | PubMed ID:17323919 [5]
  6. Gunnarsson LC, Zhou Q, Montanier C, Karlsson EN, Brumer H 3rd, and Ohlin M. (2006). Engineered xyloglucan specificity in a carbohydrate-binding module. Glycobiology. 2006;16(12):1171-80. DOI:10.1093/glycob/cwl038 | PubMed ID:16902199 [6]
  7. Neustroev KN, Golubev AM, Sinnott ML, Borriss R, Krah M, Brumer H 3rd, Eneyskaya EV, Shishlyannikov S, Shabalin KA, Peshechonov VT, Korolev VG, and Kulminskaya AA. (2006). Transferase and hydrolytic activities of the laminarinase from Rhodothermus marinus and its M133A, M133C, and M133W mutants. Glycoconj J. 2006;23(7-8):501-11. DOI:10.1007/s10719-006-6733-0 | PubMed ID:17006642 [7]
  8. Stiernstedt J, Nordgren N, Wågberg L, Brumer H 3rd, Gray DG, and Rutland MW. (2006). Friction and forces between cellulose model surfaces: a comparison. J Colloid Interface Sci. 2006;303(1):117-23. DOI:10.1016/j.jcis.2006.06.070 | PubMed ID:16949086 [8]
  9. Martinez-Fleites C, Guerreiro CI, Baumann MJ, Taylor EJ, Prates JA, Ferreira LM, Fontes CM, Brumer H, and Davies GJ. (2006). Crystal structures of Clostridium thermocellum xyloglucanase, XGH74A, reveal the structural basis for xyloglucan recognition and degradation. J Biol Chem. 2006;281(34):24922-33. DOI:10.1074/jbc.M603583200 | PubMed ID:16772298 [9]
  10. Fauré R, Saura-Valls M, Brumer H 3rd, Planas A, Cottaz S, and Driguez H. (2006). Synthesis of a library of xylogluco-oligosaccharides for active-site mapping of xyloglucan endo-transglycosylase. J Org Chem. 2006;71(14):5151-61. DOI:10.1021/jo0525682 | PubMed ID:16808501 [10]
  11. Lönnberg H, Zhou Q, Brumer H 3rd, Teeri TT, Malmström E, and Hult A. (2006). Grafting of cellulose fibers with poly(epsilon-caprolactone) and poly(L-lactic acid) via ring-opening polymerization. Biomacromolecules. 2006;7(7):2178-85. DOI:10.1021/bm060178z | PubMed ID:16827585 [11]
  12. Stiernstedt J, Brumer H 3rd, Zhou Q, Teeri TT, and Rutland MW. (2006). Friction between cellulose surfaces and effect of xyloglucan adsorption. Biomacromolecules. 2006;7(7):2147-53. DOI:10.1021/bm060100i | PubMed ID:16827581 [12]
  13. Saura-Valls M, Fauré R, Ragàs S, Piens K, Brumer H, Teeri TT, Cottaz S, Driguez H, and Planas A. (2006). Kinetic analysis using low-molecular mass xyloglucan oligosaccharides defines the catalytic mechanism of a Populus xyloglucan endotransglycosylase. Biochem J. 2006;395(1):99-106. DOI:10.1042/BJ20051396 | PubMed ID:16356166 [13]
  14. Uhlén M, Björling E, Agaton C, Szigyarto CA, Amini B, Andersen E, Andersson AC, Angelidou P, Asplund A, Asplund C, Berglund L, Bergström K, Brumer H, Cerjan D, Ekström M, Elobeid A, Eriksson C, Fagerberg L, Falk R, Fall J, Forsberg M, Björklund MG, Gumbel K, Halimi A, Hallin I, Hamsten C, Hansson M, Hedhammar M, Hercules G, Kampf C, Larsson K, Lindskog M, Lodewyckx W, Lund J, Lundeberg J, Magnusson K, Malm E, Nilsson P, Odling J, Oksvold P, Olsson I, Oster E, Ottosson J, Paavilainen L, Persson A, Rimini R, Rockberg J, Runeson M, Sivertsson A, Sköllermo A, Steen J, Stenvall M, Sterky F, Strömberg S, Sundberg M, Tegel H, Tourle S, Wahlund E, Waldén A, Wan J, Wernérus H, Westberg J, Wester K, Wrethagen U, Xu LL, Hober S, and Pontén F. (2005). A human protein atlas for normal and cancer tissues based on antibody proteomics. Mol Cell Proteomics. 2005;4(12):1920-32. DOI:10.1074/mcp.M500279-MCP200 | PubMed ID:16127175 [14]
  15. Kallas AM, Piens K, Denman SE, Henriksson H, Fäldt J, Johansson P, Brumer H, and Teeri TT. (2005). Enzymatic properties of native and deglycosylated hybrid aspen (Populus tremulaxtremuloides) xyloglucan endotransglycosylase 16A expressed in Pichia pastoris. Biochem J. 2005;390(Pt 1):105-13. DOI:10.1042/BJ20041749 | PubMed ID:15804235 [15]
  16. Engfeldt T, Renberg B, Brumer H, Nygren PA, and Karlström AE. (2005). Chemical synthesis of triple-labelled three-helix bundle binding proteins for specific fluorescent detection of unlabelled protein. Chembiochem. 2005;6(6):1043-50. DOI:10.1002/cbic.200400388 | PubMed ID:15880677 [16]
  17. Ghebremichael KA, Gunaratna KR, Henriksson H, Brumer H, and Dalhammar G. (2005). A simple purification and activity assay of the coagulant protein from Moringa oleifera seed. Water Res. 2005;39(11):2338-44. DOI:10.1016/j.watres.2005.04.012 | PubMed ID:15921719 [17]
  18. Greffe L, Bessueille L, Bulone V, and Brumer H. (2005). Synthesis, preliminary characterization, and application of novel surfactants from highly branched xyloglucan oligosaccharides. Glycobiology. 2005;15(4):437-45. DOI:10.1093/glycob/cwi013 | PubMed ID:15537791 [18]
  19. Gustavsson MT, Persson PV, Iversen T, Martinelle M, Hult K, Teeri TT, and Brumer H 3rd. (2005). Modification of cellulose fiber surfaces by use of a lipase and a xyloglucan endotransglycosylase. Biomacromolecules. 2005;6(1):196-203. DOI:10.1021/bm049588i | PubMed ID:15638521 [19]
  20. Brumer H 3rd, Zhou Q, Baumann MJ, Carlsson K, and Teeri TT. (2004). Activation of crystalline cellulose surfaces through the chemoenzymatic modification of xyloglucan. J Am Chem Soc. 2004;126(18):5715-21. DOI:10.1021/ja0316770 | PubMed ID:15125664 [20]
  21. Eriksson T, Stals I, Collén A, Tjerneld F, Claeyssens M, Stålbrand H, and Brumer H. (2004). Heterogeneity of homologously expressed Hypocrea jecorina (Trichoderma reesei) Cel7B catalytic module. Eur J Biochem. 2004;271(7):1266-76. DOI:10.1111/j.1432-1033.2004.04031.x | PubMed ID:15030476 [21]
  22. Johansson P, Brumer H 3rd, Baumann MJ, Kallas AM, Henriksson H, Denman SE, Teeri TT, and Jones TA. (2004). Crystal structures of a poplar xyloglucan endotransglycosylase reveal details of transglycosylation acceptor binding. Plant Cell. 2004;16(4):874-86. DOI:10.1105/tpc.020065 | PubMed ID:15020748 [22]
  23. Henriksson H, Denman SE, Campuzano ID, Ademark P, Master ER, Teeri TT, and Brumer H 3rd. (2003). N-linked glycosylation of native and recombinant cauliflower xyloglucan endotransglycosylase 16A. Biochem J. 2003;375(Pt 1):61-73. DOI:10.1042/BJ20030485 | PubMed ID:12826015 [23]
  24. Borriss R, Krah M, Brumer H 3rd, Kerzhner MA, Ivanen DR, Eneyskaya EV, Elyakova LA, Shishlyannikov SM, Shabalin KA, and Neustroev KN. (2003). Enzymatic synthesis of 4-methylumbelliferyl (1-->3)-beta-D-glucooligosaccharides-new substrates for beta-1,3-1,4-D-glucanase. Carbohydr Res. 2003;338(14):1455-67. DOI:10.1016/s0008-6215(03)00199-x | PubMed ID:12829391 [24]
  25. Johansson P, Denman S, Brumer H, Kallas AM, Henriksson H, Bergfors T, Teeri TT, and Jones TA. (2003). Crystallization and preliminary X-ray analysis of a xyloglucan endotransglycosylase from Populus tremula x tremuloides. Acta Crystallogr D Biol Crystallogr. 2003;59(Pt 3):535-7. DOI:10.1107/s090744490202348x | PubMed ID:12595718 [25]
  26. Eneyskaya EV, Brumer H 3rd, Backinowsky LV, Ivanen DR, Kulminskaya AA, Shabalin KA, and Neustroev KN. (2003). Enzymatic synthesis of beta-xylanase substrates: transglycosylation reactions of the beta-xylosidase from Aspergillus sp. Carbohydr Res. 2003;338(4):313-25. DOI:10.1016/s0008-6215(02)00467-6 | PubMed ID:12559729 [26]
  27. Bourquin V, Nishikubo N, Abe H, Brumer H, Denman S, Eklund M, Christiernin M, Teeri TT, Sundberg B, and Mellerowicz EJ. (2002). Xyloglucan endotransglycosylases have a function during the formation of secondary cell walls of vascular tissues. Plant Cell. 2002;14(12):3073-88. DOI:10.1105/tpc.007773 | PubMed ID:12468728 [27]
  28. Brun E, Brumer H 3rd, MacKenzie LF, Withers SG, and McIntosh LP. (2001). Assignment of selectively 13C-labeled cellopentaose synthesized using an engineered glycosynthase. J Biomol NMR. 2001;21(1):67-8. DOI:10.1023/a:1011927400439 | PubMed ID:11693570 [28]
  29. Becker D, Braet C, Brumer H 3rd, Claeyssens M, Divne C, Fagerström BR, Harris M, Jones TA, Kleywegt GJ, Koivula A, Mahdi S, Piens K, Sinnott ML, Ståhlberg J, Teeri TT, Underwood M, and Wohlfahrt G. (2001). Engineering of a glycosidase Family 7 cellobiohydrolase to more alkaline pH optimum: the pH behaviour of Trichoderma reesei Cel7A and its E223S/ A224H/L225V/T226A/D262G mutant. Biochem J. 2001;356(Pt 1):19-30. DOI:10.1042/0264-6021:3560019 | PubMed ID:11336632 [29]
  30. Hart DO, He S, Chany CJ 2nd, Withers SG, Sims PF, Sinnott ML, and Brumer H 3rd. (2000). Identification of Asp-130 as the catalytic nucleophile in the main alpha-galactosidase from Phanerochaete chrysosporium, a family 27 glycosyl hydrolase. Biochemistry. 2000;39(32):9826-36. DOI:10.1021/bi0008074 | PubMed ID:10933800 [30]
  31. Brumer H 3rd, Sims PF, and Sinnott ML. (1999). Lignocellulose degradation by Phanerochaete chrysosporium: purification and characterization of the main alpha-galactosidase. Biochem J. 1999;339 ( Pt 1)(Pt 1):43-53. | Google Books | Open Library PubMed ID:10085226 [31]

All Medline abstracts: PubMed