Help:References/More examples

This is a simplified CAZypedia page to demonstrate how in-text citations work. To see the wiki code used to make each of the citations/bibliographic references, click the "View source" tab at the top of the page. You may copy & paste parts of this code into your own page to assist you with reference formatting.

• Author: Harry Brumer
• Responsible Curator: Harry Brumer

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Examples

This is an example of how to insert references to a journal article (e.g. [1]) using the PubMed ID number.

Multiple references can go in the same place like this [1, 2].

You can even cite books using just the ISBN [3].

References that are not in PubMed or the ISBNdb can be typed in manually [4] (note that the DOI link must also be added by hand in this case).

This is an even more complicated example, where a comment field is used to add the chapter information for a book chapter [5].

Internet URLs can sometimes also be effectively placed in the Reference list [6, 7].

There is essentially no limit to the number of references that can be cited in one place in the text [1, 3, 4, 5, 6, 7].

Note that the references are automatically numbered based on the first appearance in the text, not the order they are listed in the "biblio" section [8].

Non-working example

Although it appears that comment fields can themselves include other references [9], the numbering of these addition references in the comment field appears to be incorrect.

References

1. Comfort DA, Bobrov KS, Ivanen DR, Shabalin KA, Harris JM, Kulminskaya AA, Brumer H, and Kelly RM. (2007) Biochemical analysis of Thermotoga maritima GH36 alpha-galactosidase (TmGalA) confirms the mechanistic commonality of clan GH-D glycoside hydrolases. Biochemistry. 46, 3319-30. DOI:10.1021/bi061521n |
2. He S and Withers SG. (1997) Assignment of sweet almond beta-glucosidase as a family 1 glycosidase and identification of its active site nucleophile. J Biol Chem. 272, 24864-7. DOI:10.1074/jbc.272.40.24864 |
3. Robert V. Stick and Spencer J. Williams. (2009) Carbohydrates. Elsevier Science. ISBN: 9780240521183 | Google Books | Open Library
4. Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. DOI: 10.1021/cr00105a006
5. Claus-Wilhelm von der Lieth, Thomas Luetteke, and Martin Frank. (2010-01-19) Bioinformatics for Glycobiology and Glycomics: An Introduction. Wiley. ISBN: 9780470016671 | Google Books | Open Library

   Chapter 5: Coutinho PM, Rancurel C, Stam M, Bernard T, Couto FM, Danchin EGJ, Henrissat B. "Carbohydrate-active Enzymes Database: Principles and Classification of Glycosyltransferases."

6. Carbohydrate Active Enzymes database; URL http://www.cazy.org/
7. http://www.weizmann.ac.il/Biological_Chemistry/scientist/Bayer/new_pages/reserch_topics/cellulosome_systems.html Accessed 2010-05-28.
8. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, and Henrissat B. (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 37, D233-8. DOI:10.1093/nar/gkn663 |
9. Schwartz PH, Nethercott H, Kirov II, Ziaeian B, Young MJ, and Klassen H. (2005) Expression of neurodevelopmental markers by cultured porcine neural precursor cells. Stem Cells. 23, 1286-94. DOI:10.1634/stemcells.2004-0306 |

   See also [1, 2] for additional info.

10. Webber C and Barton GJ. (2001) Estimation of P-values for global alignments of protein sequences. Bioinformatics. 17, 1158-67. DOI:10.1093/bioinformatics/17.12.1158 |
11. Jeremy Mark Berg and Lubert Stryer. (2002) Biochemistry. ISBN: 0716749548 | Google Books | Open Library