Search results

• Carbohydrate Binding Module Family 16
  ...ldanaerobius polysaccharolyticus'' ManA, in complex with cellopentaose, [{{PDBlink}}2zex PDB ID 2zex]. Four key residues of the binding cleft are highlighted ...as well as two stretches of polar residues on both sides of the cleft, [{{PDBlink}}2zew PDB ID 2zew] <cite>Bae2008</cite>. Affinity studies of targeted muta
  5 KB (714 words) - 14:16, 18 December 2021
• Carbohydrate Binding Module Family 50
  ...Blink}}1e0g 1e0g] <cite>Bateman2000</cite>, [{{PDBlink}}2mkx 2mkx] and [{{PDBlink}}4pxv 4pxv]). The CBM50 modules have a βααβ fold with the two helices p ...coli'' membrane-bond lytic murein transglycosylase D (MltD) (PDB entry: [{{PDBlink}}1e0g 1e0g]) by NMR spectroscopy <cite>Bateman2000</cite>.
  5 KB (634 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 78
  ...e has revealed key active-site details (PDB IDs [{{PDBlink}}3w5m 3w5m], [{{PDBlink}}3w5n 3w5n]) <cite>Fujimoto2013</cite>. More recently, the crystal structur ...-D structure: ''Bacillus'' sp. GL1 α-L-rhamnosidase B (BsRhaB) (PDB IDs [{{PDBlink}}2okx 2okx]) <cite>Cui2007</cite>.
  5 KB (659 words) - 14:14, 18 December 2021
• Polysaccharide Lyase Family 8
  ...itin AC lyase (EC 4.2.2.5) - ''F. heparinum'' <cite>Fethiere1999</cite>([{{PDBlink}}1cb8 PDB 1CB8]).<br/> ...roitin ABC lyase (EC 4.2.2.20) – ''P. vulgaris'' <cite>Huang2003</cite>([{{PDBlink}}1hn0 PDB 1HN0]).<br/>
  5 KB (690 words) - 14:18, 18 December 2021
• Carbohydrate Esterase Family 3
  ...g|thumb|300px|Figure 1:''Tc''AE206 from ''Talaromyces cellulolyticus'' ([{{PDBlink}}5B5S PDB ID 5B5S]). Colours correspond to α-helices (cyan), β-sheets (ma ..., respectively <cite>Correia2008</cite>. In other studies, ''Tc''AE206 ([{{PDBlink}}5B5S PDB ID 5B5S]) was not assayed against acetylated xylan, but the ''k''
  7 KB (1,000 words) - 14:16, 18 December 2021
• Polysaccharide Lyase Family 9
  ...ht|'''Figure 1.''' '''BT4170 ([{{PDBlink}}5OLR PDB ID 5OLR]) and Pel9A ([{{PDBlink}}1RU4 PDB ID 1RU4]) active site'''. Superimposed active residues of BT4170 ...00px|right|'''Figure 2.''' '''Pel9A in complex with Ca²⁺''' ([{{PDBlink}}1RU4 PDB ID 1RU4]) '''A.''' Schematic representation of Pel9A parallel β-
  5 KB (702 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 29
  ...g/ Protein Data Bank] (PDB accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza]). Studies of Ssα-fuc demonstrated that mutation of the Glu res ...{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/b
  9 KB (1,247 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 105
  ...e residue in some GH105 enzymes (e.g. [{{PDBlink}}4CE7 PDB ID 4CE7] and [{{PDBlink}}5NOA PDB ID 5NOA]) <cite>Pettersen2004 Collen2014 Munoz-Munoz2017</cite>. ...e enzyme from the fungus ''Thielavia terrestris'' has also been solved ([{{PDBlink}}4XUV PDB ID 4XUV]). All of these enzymes share an (α/α)6-barrel structur
  9 KB (1,286 words) - 14:16, 18 December 2021
• Glycoside Hydrolase Family 117
  ...d one is from the human gut bacterium ''Bacteroidetes plebeius'' (PDB: [{{PDBlink}}4ak5 4AK5]) <cite>Hehemann2012</cite>. ...or Zg4663) from the marine bacteria ''Zobellia galactanivorans'', PDB: [{{PDBlink}}3p2n 3p2n] <cite>Rebuffet2011</cite>.
  5 KB (742 words) - 14:14, 18 December 2021
• Carbohydrate Binding Module Family 8
  ...ntation of the ''Dictyostelium discoideum'' DdCBM8 from the CelA enzyme [{{PDBlink}}7T7Z 7T7Z] showing the hydrophobic platform which is its predicted planar ...Ms <cite>Liberato2022</cite>. These residues align with the [[CBM29]]-2 [{{PDBlink}}1GWM 1GWM] binding site <cite>Charnock2002</cite>, the residues R634 and Q
  5 KB (716 words) - 08:00, 2 May 2024
• Glycoside Hydrolase Family 66
  ...mo]), and in complex with 4’,5’-epoxypentyl α-D-glucopyranoside (PDB ID [{{PDBlink}}3vmp 3vmp]), have been solved <cite>Nsuzu2012</cite>. The catalytic domain A structure for a GH66 CITase-T3040 (PDB ID [{{PDBlink}}3wnk 3wnk]-[{{PDBlink}}3wno 3wno]) has been reported <cite>Nsuzu2014</cite>. CITase-T3040 has a s
  6 KB (819 words) - 14:18, 18 December 2021
• Glycoside Hydrolase Family 72
  ...w61]) and in complex with carbohydrates ([{{PDBlink}}2w62 PDB ID 2w62], [{{PDBlink}}2w63 PDB ID 2w63]) (Figure 1). The enzyme folds as a (beta/alpha)<sub>8</
  6 KB (724 words) - 14:19, 18 December 2021
• Carbohydrate Binding Module Family 14
  ...ange. B) Surface representation of ''Hs''CBM14. C) ''Cf''CBM14 (PDB ID: [{{PDBlink}}6BN0 6BN0]) cartoon representation. Residues involved in binding (Lys49, C ...f''CBM14 is the same as ''Hs''CBM14 (PDB ID: [{{PDBlink}}5HBF 5HBF] and [{{PDBlink}}6SO0 6SO0]) and other [http://www.cazy.org/CBM14_structure.html structural
  9 KB (1,186 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 109
  ...ent Ca-atoms for ''Zymomonas mobilis'' glucose-fructose oxidoreductase ([{{PDBlink}}1ofg PDB 1ofg]). More distant structural homologs are identified by means ...cetylgalactosaminidase <cite>1</cite> ([{{PDBlink}}2ixa PDB 2ixa]) and ([{{PDBlink}}2ixb PDB 2ixb]).
  5 KB (646 words) - 19:22, 15 December 2023
• Polysaccharide Lyase Family 20
  ...'Figure 1:''' PL20 glucuronan lyase from ''Trichoderma reesei'' (PDB ID [{{PDBlink}}2zzj 2zzj]).]] ...rGL was the first PL20 structure to be reported ('''Figure 1''', PDB ID [{{PDBlink}}2zzj 2zzj], 1.8 &Aring; resolution) <cite>Konno2009b</cite>. TrGL has a ty
  3 KB (452 words) - 14:17, 18 December 2021
• Glycoside Hydrolase Family 120
  ...3vst]), xylose (PDB ID [{{PDBlink}}3vsv 3vsv]), and xylobiose (PDB ID [{{PDBlink}}3vsu 3vsu]); in all three complexes the ligands bind at a similar locatio ;First 3-D structure: XylC from ''T. saccharolyticum'' (''e.g.'' PDB ID [{{PDBlink}}3vsu 3vsu]) <cite>Huang2012</cite>.
  6 KB (843 words) - 14:14, 18 December 2021
• Carbohydrate Binding Module Family 65
  ...ubacterium cellulosolvens'' CBM65A ([{{PDBlink}}4AFM 4AFM]) and CBM65B ([{{PDBlink}}2YPJ 2YPJ]), solved using X-ray crystallography, display a beta-sandwich f ...x structure of a CBM65 were CBM65A ([{{PDBlink}}4AFM 4AFM]) and CBM65B ([{{PDBlink}}2YPJ 2YPJ]), respectively <cite>Luis2013</cite>.
  6 KB (856 words) - 14:16, 18 December 2021
• Glycoside Hydrolase Family 35
  ...ectively (PDB codes [{{PDBlink}}3ogr 3ogr], [{{PDBlink}}3ogs 3ogs], and [{{PDBlink}}3ogv 3ogv], respectively) <cite>Maksimainen2010</cite>. ...7]), Tr-β-gal (PDB code [{{PDBlink}}3og2 3og2]) and Btm-β-gal (PDB code [{{PDBlink}}3d3a 3d3a]) are colored in green, brown and blue, respectively.]]
  10 KB (1,320 words) - 14:18, 18 December 2021
• Glycoside Hydrolase Family 52
  ...''Geobacillus thermoglucosidasius'' in complex with xylobiose (orange)([{{PDBlink}}4C1P PDB ID 4C1P]).''' The active site is enclosed by residues from both m ...eractions between monomers of the GH52 from ''G. thermoglucosidasius'' ([{{PDBlink}}4C1P PDB ID 4C1P]) forming a deep pocket to enclose and distort the non-re
  7 KB (960 words) - 14:15, 18 December 2021
• Carbohydrate Binding Module Family 86
  ...cture of the shallow binding site. C) Crystal structure of ''Ri''CBM86 ([{{PDBlink}}6SGF PDB: 6SGF]) with the four visible xylosyl residues of the xylohexaose ...mplex with xylohexaose was determined at a resolution of 1.8 Å in 2019 ([{{PDBlink}}6SGF PDB: 6SGF]) <cite>Leth2019</cite>. The structure is a β-sandwich fol
  5 KB (701 words) - 14:20, 18 December 2021

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