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Difference between revisions of "Auxiliary Activity Family 3"
Harry Brumer (talk | contribs) (Fixed Davies & Sinnott ref.) |
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| − | = | + | = Familiy members = |
AA3 members have been divided into three subfamilies based on activity. | AA3 members have been divided into three subfamilies based on activity. | ||
| − | + | == Subfamily 1 - CDH == | |
| − | |||
| − | === Subfamily 2 - P2O === | + | === Kinetics and Mechanism === |
| − | + | Content is to be added here. | |
| + | |||
| + | === Catalytic Residues === | ||
| + | Content is to be added here. | ||
| + | |||
| + | === Three-dimensional structures === | ||
| + | Content is to be added here. | ||
| + | |||
| + | === Family Firsts === | ||
| + | ;First stereochemistry determination: Content is to be added here. | ||
| + | ;First catalytic nucleophile identification: Content is to be added here. | ||
| + | ;First general acid/base residue identification: Content is to be added here. | ||
| + | ;First 3-D structure: Content is to be added here. | ||
| + | |||
| + | |||
| + | |||
| + | == Subfamily 2 - P2O == | ||
| + | |||
| + | === Kinetics and Mechanism === | ||
| + | Content is to be added here. | ||
| − | === | + | === Catalytic Residues === |
| − | + | Content is to be added here. | |
| + | === Three-dimensional structures === | ||
Content is to be added here. | Content is to be added here. | ||
| − | + | === Family Firsts === | |
| + | ;First stereochemistry determination: Content is to be added here. | ||
| + | ;First catalytic nucleophile identification: Content is to be added here. | ||
| + | ;First general acid/base residue identification: Content is to be added here. | ||
| + | ;First 3-D structure: Content is to be added here. | ||
| + | |||
| + | == Subfamily 3 - GO == | ||
| − | |||
| − | == Kinetics and Mechanism == | + | === Kinetics and Mechanism === |
Content is to be added here. | Content is to be added here. | ||
| − | == Catalytic Residues == | + | === Catalytic Residues === |
Content is to be added here. | Content is to be added here. | ||
| − | == Three-dimensional structures == | + | === Three-dimensional structures === |
Content is to be added here. | Content is to be added here. | ||
| − | == Family Firsts == | + | === Family Firsts === |
;First stereochemistry determination: Content is to be added here. | ;First stereochemistry determination: Content is to be added here. | ||
;First catalytic nucleophile identification: Content is to be added here. | ;First catalytic nucleophile identification: Content is to be added here. | ||
;First general acid/base residue identification: Content is to be added here. | ;First general acid/base residue identification: Content is to be added here. | ||
;First 3-D structure: Content is to be added here. | ;First 3-D structure: Content is to be added here. | ||
| + | Content is to be added here. | ||
| + | |||
| + | Authors may get an idea of what to put in each field from ''Curator Approved'' [[Glycoside Hydrolase Families]]. ''(TIP: Right click with your mouse and open this link in a new browser window...)'' | ||
| + | |||
| + | In the meantime, please see these references for an essential introduction to the CAZy classification system: <cite>DaviesSinnott2008 Cantarel2009</cite>. | ||
| + | |||
== References == | == References == | ||
| Line 66: | Line 96: | ||
#DaviesSinnott2008 Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. ''The Biochemist'', vol. 30, no. 4., pp. 26-32. [http://www.biochemist.org/bio/03004/0026/030040026.pdf Download PDF version]. | #DaviesSinnott2008 Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. ''The Biochemist'', vol. 30, no. 4., pp. 26-32. [http://www.biochemist.org/bio/03004/0026/030040026.pdf Download PDF version]. | ||
</biblio> | </biblio> | ||
| + | |||
| + | |||
[[Category:Auxiliary Activity Families|AA003]] | [[Category:Auxiliary Activity Families|AA003]] | ||
Revision as of 03:55, 19 July 2017
This page is currently under construction. This means that the Responsible Curator has deemed that the page's content is not quite up to CAZypedia's standards for full public consumption. All information should be considered to be under revision and may be subject to major changes.
- Author: ^^^Roland Ludwig^^^
- Responsible Curator: ^^^Roland Ludwig^^^
| Auxiliary Activity Family AA3 | |
| Clan | GH-x |
| Mechanism | retaining/inverting |
| Active site residues | known/not known |
| CAZy DB link | |
| http://www.cazy.org/AA3.html | |
Familiy members
AA3 members have been divided into three subfamilies based on activity.
Subfamily 1 - CDH
Kinetics and Mechanism
Content is to be added here.
Catalytic Residues
Content is to be added here.
Three-dimensional structures
Content is to be added here.
Family Firsts
- First stereochemistry determination
- Content is to be added here.
- First catalytic nucleophile identification
- Content is to be added here.
- First general acid/base residue identification
- Content is to be added here.
- First 3-D structure
- Content is to be added here.
Subfamily 2 - P2O
Kinetics and Mechanism
Content is to be added here.
Catalytic Residues
Content is to be added here.
Three-dimensional structures
Content is to be added here.
Family Firsts
- First stereochemistry determination
- Content is to be added here.
- First catalytic nucleophile identification
- Content is to be added here.
- First general acid/base residue identification
- Content is to be added here.
- First 3-D structure
- Content is to be added here.
Subfamily 3 - GO
Kinetics and Mechanism
Content is to be added here.
Catalytic Residues
Content is to be added here.
Three-dimensional structures
Content is to be added here.
Family Firsts
- First stereochemistry determination
- Content is to be added here.
- First catalytic nucleophile identification
- Content is to be added here.
- First general acid/base residue identification
- Content is to be added here.
- First 3-D structure
- Content is to be added here.
Content is to be added here.
Authors may get an idea of what to put in each field from Curator Approved Glycoside Hydrolase Families. (TIP: Right click with your mouse and open this link in a new browser window...)
In the meantime, please see these references for an essential introduction to the CAZy classification system: [1, 2].
References
-
Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. The Biochemist, vol. 30, no. 4., pp. 26-32. Download PDF version.
- Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, and Henrissat B. (2009). The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 2009;37(Database issue):D233-8. DOI:10.1093/nar/gkn663 |