User talk:Harry Brumer

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Contents

To-do list

  • Write a history/timeline page

Substrate specificity test


User admin

Direct link to account creation page

http://www.cazypedia.org/index.php?title=Special:UserLogin&type=signup

Extensions which are installed

See also: Special:Version and Special:Specialpages

  • Note: The list of users, blocking users, renaming users, and user rights management can all be accessed at Special:Specialpages.
Rename user
http://www.mediawiki.org/wiki/Extension:Renameuser
reCAPTCHA - anti spam
http://www.mediawiki.org/wiki/Extension:ReCAPTCHA
New user log
Accessible at Special:Log/newusers http://www.mediawiki.org/wiki/Newuserlog
Mass emailer
Special:MassEmail

Other useful user admin stuff

Prevent access, especially ACCOUNT CREATION BY SYSOPS ONLY
http://www.mediawiki.org/wiki/Manual:Preventing_access
Add confirm account extension instead?
http://www.mediawiki.org/wiki/Extension:ConfirmAccount


Optional admin stuff, maybe for future implementation

Page-level access control?
http://www.mediawiki.org/wiki/Category:Page_Access_Control_Extensions
New user email notification
http://www.mediawiki.org/wiki/Extension:New_User_Email_Notification
Password reset extension
http://www.mediawiki.org/wiki/Extension:Password_Reset

Where do I find...

The navigation sidebar settings
MediaWiki:Sidebar
The boilerplate text automatically inserted by Preloader.php upon new page creation in the main namespace
Template:Boilerplate
MediaWiki sysadmin Hub
http://www.mediawiki.org/wiki/Sysadmin_hub
Redirect code
#redirect [[Glycoside Hydrolase Family 16]]

Some useful configuration pages

Sitenotice - for adding info to every page

MediaWiki:Sitenotice

Sitesubtitle - Edited, not sure of the effect...

MediaWiki:Sitesubtitle


Some useful extensions

Boilerplate extension - might be useful for creating new page templates

http://www.mediawiki.org/wiki/Extension:Boilerplate http://www.mediawiki.org/wiki/Extension:Preloader

Referencing extensions

http://www.mediawiki.org/wiki/Category:Referencing_extensions

Biblio

http://www.mediawiki.org/wiki/Extension:Biblio http://openwetware.org/wiki/Wikiomics:Biblio

Extension:Pubmed

http://www.mediawiki.org/wiki/Extension:Pubmed

Extension:PubmedParser

http://www.mediawiki.org/wiki/Extension:PubmedParser

some templates from wikipedia

http://en.wikipedia.org/wiki/Wikipedia:Template_messages

one thing that is semi ugly is that your login name appears at the top of your page or in the list of contributors (for instance User:HBrumer3 or User:Bernie); wouldn't it be nicer if the full real name of people would appear just like on the Board of Curators' page with Harry Brumer or Bernard Henrissat ?

Useful icons gallery

http://commons.wikimedia.org/wiki/User:Ipatrol/Galleries/Icons

http://commons.wikimedia.org/wiki/User:Rocket000/Useful_icon_gallery

Log

This section is a little Mediawiki maintenance log, which might become it's own page some day.

Started 02 September 2009.

UserContactLinks extended syntax extension

  • http://www.mediawiki.org/wiki/Extension:User_Contact_Links
  • Allows replacement of "[[:User:username|full name]]" with "(3 tildes)User Name(3 tildes)", where User Name can be:
    • wiki username
    • user full name (first space last)
    • last name of the user
    • partial match of any part of user full name
  • Had to slightly edit both PHP files to break-up (3 tildes)User Name(3 tildes) to "^^^user^^ ^" in description; this was resulting in "incorrect user" being shown on Special:Version.

Harry Brumer 07:59, 2 September 2009 (UTC)

Implemented ContactPage extension

  • http://www.mediawiki.org/wiki/Extension:ContactPage
  • Gives world-accessible contact form: Special:Contact
  • Took some tweaking to get it to work:
    • Line 125 in SpecialContact.php ($captcha = ConfirmEditHooks::getInstance();) broke Mediawiki
    • Upgrading to ConfirmEdit-MW1.15-r50221 broke reCaptcha, e.g. on user signup page.
    • Fixed by commenting out offending Line 125
  • Also hacked ConfirmEdit.php to put "contactpage" captcha trigger there, instead of in LocalSettings.php (left a comment in the latter to that effect).

Harry Brumer 15:43, 2 September 2009 (UTC)

Playing around with image thumbnail settings

Harry Brumer 14:12, 7 September 2009 (UTC)

Implemented Extension:Cite/Special:Cite.php

Harry Brumer 13:12, 5 November 2009 (UTC)

  • "Date retrieved" code doesn't seem to be working right. Tried to implement a solution Wikipedia is running using the ParserFunction extension and the time function, but ParserFunction seems to break the wiki. Also, had to disable MassEmailer due to some weird conflict that generated an error trail when saving Mediawiki:Cite text.

Harry Brumer 15:13, 5 November 2009 (UTC)

New version (r50579) of Extension:ParserFunctions added

  • Fixed earlier problem with ParserFunctions breaking the wiki
  • Allow use of time function in Mediawiki:Cite text to give the current time in the "Date retrieved" line.

Harry Brumer 09:39, 6 November 2009 (UTC)

Pages in Category test

Harry Brumer 10:35, 8 November 2009 (UTC)

Stopped implementing Extension:EditUser

Harry Brumer 13:29, 8 November 2009 (UTC)

Implemented Extension:LookupUser

Harry Brumer 13:48, 8 November 2009 (UTC)

Implemented Template:Smallcaps

Your source text is not altered in the output, only the way it is displayed on the screen: a copy-paste of the text will give the small caps sections in their original form; similarly, an older or non-CSS browser will only display the original text on screen. This can be seen as a problem, solved with (the sc template).
Code  
{{Smallcaps|Your Text in 4004 bc}}
Displayed
Your Text in 4004 bc
Pasted  
Your Text in 4004 bc
  • So, the code needs to look like this: {{Smallcaps|d}}, to get d. {{Smallcaps|D}} gives D.

Harry Brumer 16:27, 6 January 2010 (UTC)

Tested Extension:DynamicPageList (a.k.a. Intersection)

  • Allows showing intersections of Categories
  • http://en.wikinews.org/wiki/Wikinews:DynamicPageList
    • Worked OK but could only give simple linear lists.
    • Was difficult to figure out how to sort alphabetically given limited documentation, had to read the code to find the "categorysortkey" option.
    • e.g., this sort of worked:
<DynamicPageList>
category=Glycoside Hydrolase Families
category=Curator approved
ordermethod=categorysortkey
order=ascending
mode=none
</DynamicPageList>

Harry Brumer 12:00, 23 January 2010 (UTC)

Implementing Extension:DynamicPageList2

Examples


  • Pages in categories Glycoside Hydrolase Families and Curator approved, sorted by title, formatted as a normal category page.
{{#dpl:
|category=Glycoside Hydrolase Families
|category=Curator approved
|mode=category
|ordermethod=sortkey
|allowcachedresults=true
}}

Had to deleted live code after testing here, output was messing up table of contents above: Each "G" in the list was getting it's own subheading TOC entry.


  • Pages in categories Glycoside Hydrolase Families and Curator approved, sorted by title, formatted "inline."
{{#dpl:
|category=Glycoside Hydrolase Families
|category=Curator approved
|resultsheader=\nThere are %TOTALPAGES% Curator Approved GH pages.\n
|mode=inline
|ordermethod=sortkey
|order=descending
|allowcachedresults=yes+warn
}}

The following list was generated on April 24,  03:12 UTC.   You may want to talk:Harry Brumer}}&action=purge request the most recent version


There are 94 Curator Approved GH pages. Glycoside Hydrolase Family 131 - Glycoside Hydrolase Family 129 - Glycoside Hydrolase Family 127 - Glycoside Hydrolase Family 125 - Glycoside Hydrolase Family 124 - Glycoside Hydrolase Family 121 - Glycoside Hydrolase Family 117 - Glycoside Hydrolase Family 116 - Glycoside Hydrolase Family 115 - Glycoside Hydrolase Family 113 - Glycoside Hydrolase Family 112 - Glycoside Hydrolase Family 110 - Glycoside Hydrolase Family 109 - Glycoside Hydrolase Family 104 - Glycoside Hydrolase Family 103 - Glycoside Hydrolase Family 102 - Glycoside Hydrolase Family 101 - Glycoside Hydrolase Family 99 - Glycoside Hydrolase Family 98 - Glycoside Hydrolase Family 97 - Glycoside Hydrolase Family 95 - Glycoside Hydrolase Family 94 - Glycoside Hydrolase Family 93 - Glycoside Hydrolase Family 92 - Glycoside Hydrolase Family 89 - Glycoside Hydrolase Family 86 - Glycoside Hydrolase Family 85 - Glycoside Hydrolase Family 84 - Glycoside Hydrolase Family 82 - Glycoside Hydrolase Family 80 - Glycoside Hydrolase Family 79 - Glycoside Hydrolase Family 75 - Glycoside Hydrolase Family 74 - Glycoside Hydrolase Family 73 - Glycoside Hydrolase Family 70 - Glycoside Hydrolase Family 69 - Glycoside Hydrolase Family 68 - Glycoside Hydrolase Family 67 - Glycoside Hydrolase Family 66 - Glycoside Hydrolase Family 65 - Glycoside Hydrolase Family 63 - Glycoside Hydrolase Family 62 - Glycoside Hydrolase Family 61 - Glycoside Hydrolase Family 60 - Glycoside Hydrolase Family 58 - Glycoside Hydrolase Family 57 - Glycoside Hydrolase Family 55 - Glycoside Hydrolase Family 54 - Glycoside Hydrolase Family 53 - Glycoside Hydrolase Family 51 - Glycoside Hydrolase Family 50 - Glycoside Hydrolase Family 49 - Glycoside Hydrolase Family 48 - Glycoside Hydrolase Family 47 - Glycoside Hydrolase Family 46 - Glycoside Hydrolase Family 45 - Glycoside Hydrolase Family 44 - Glycoside Hydrolase Family 43 - Glycoside Hydrolase Family 42 - Glycoside Hydrolase Family 41 - Glycoside Hydrolase Family 40 - Glycoside Hydrolase Family 39 - Glycoside Hydrolase Family 38 - Glycoside Hydrolase Family 37 - Glycoside Hydrolase Family 36 - Glycoside Hydrolase Family 35 - Glycoside Hydrolase Family 32 - Glycoside Hydrolase Family 31 - Glycoside Hydrolase Family 30 - Glycoside Hydrolase Family 29 - Glycoside Hydrolase Family 28 - Glycoside Hydrolase Family 27 - Glycoside Hydrolase Family 26 - Glycoside Hydrolase Family 25 - Glycoside Hydrolase Family 23 - Glycoside Hydrolase Family 21 - Glycoside Hydrolase Family 20 - Glycoside Hydrolase Family 19 - Glycoside Hydrolase Family 18 - Glycoside Hydrolase Family 17 - Glycoside Hydrolase Family 16 - Glycoside Hydrolase Family 15 - Glycoside Hydrolase Family 13 - Glycoside Hydrolase Family 11 - Glycoside Hydrolase Family 10 - Glycoside Hydrolase Family 9 - Glycoside Hydrolase Family 8 - Glycoside Hydrolase Family 7 - Glycoside Hydrolase Family 6 - Glycoside Hydrolase Family 5 - Glycoside Hydrolase Family 4 - Glycoside Hydrolase Family 3 - Glycoside Hydrolase Family 2 - Glycoside Hydrolase Family 1


  • Pages in categories Glycoside Hydrolase Families and Curator approved, in a sortable table. Note!: Needs the dummy include line, or no output is produced.
{{#dpl:
|category=Glycoside Hydrolase Families
|category=Curator approved
|resultsheader=\nThere are %TOTALPAGES% Curator Approved GH pages.\n
|ordermethod=sortkey
|include=-
|table=class=sortable,GH Families
|allowcachedresults=true
}}


There are 94 Curator Approved GH pages.

GH Families
Glycoside Hydrolase Family 1
Glycoside Hydrolase Family 2
Glycoside Hydrolase Family 3
Glycoside Hydrolase Family 4
Glycoside Hydrolase Family 5
Glycoside Hydrolase Family 6
Glycoside Hydrolase Family 7
Glycoside Hydrolase Family 8
Glycoside Hydrolase Family 9
Glycoside Hydrolase Family 10
Glycoside Hydrolase Family 11
Glycoside Hydrolase Family 13
Glycoside Hydrolase Family 15
Glycoside Hydrolase Family 16
Glycoside Hydrolase Family 17
Glycoside Hydrolase Family 18
Glycoside Hydrolase Family 19
Glycoside Hydrolase Family 20
Glycoside Hydrolase Family 21
Glycoside Hydrolase Family 23
Glycoside Hydrolase Family 25
Glycoside Hydrolase Family 26
Glycoside Hydrolase Family 27
Glycoside Hydrolase Family 28
Glycoside Hydrolase Family 29
Glycoside Hydrolase Family 30
Glycoside Hydrolase Family 31
Glycoside Hydrolase Family 32
Glycoside Hydrolase Family 35
Glycoside Hydrolase Family 36
Glycoside Hydrolase Family 37
Glycoside Hydrolase Family 38
Glycoside Hydrolase Family 39
Glycoside Hydrolase Family 40
Glycoside Hydrolase Family 41
Glycoside Hydrolase Family 42
Glycoside Hydrolase Family 43
Glycoside Hydrolase Family 44
Glycoside Hydrolase Family 45
Glycoside Hydrolase Family 46
Glycoside Hydrolase Family 47
Glycoside Hydrolase Family 48
Glycoside Hydrolase Family 49
Glycoside Hydrolase Family 50
Glycoside Hydrolase Family 51
Glycoside Hydrolase Family 53
Glycoside Hydrolase Family 54
Glycoside Hydrolase Family 55
Glycoside Hydrolase Family 57
Glycoside Hydrolase Family 58
Glycoside Hydrolase Family 60
Glycoside Hydrolase Family 61
Glycoside Hydrolase Family 62
Glycoside Hydrolase Family 63
Glycoside Hydrolase Family 65
Glycoside Hydrolase Family 66
Glycoside Hydrolase Family 67
Glycoside Hydrolase Family 68
Glycoside Hydrolase Family 69
Glycoside Hydrolase Family 70
Glycoside Hydrolase Family 73
Glycoside Hydrolase Family 74
Glycoside Hydrolase Family 75
Glycoside Hydrolase Family 79
Glycoside Hydrolase Family 80
Glycoside Hydrolase Family 82
Glycoside Hydrolase Family 84
Glycoside Hydrolase Family 85
Glycoside Hydrolase Family 86
Glycoside Hydrolase Family 89
Glycoside Hydrolase Family 92
Glycoside Hydrolase Family 93
Glycoside Hydrolase Family 94
Glycoside Hydrolase Family 95
Glycoside Hydrolase Family 97
Glycoside Hydrolase Family 98
Glycoside Hydrolase Family 99
Glycoside Hydrolase Family 101
Glycoside Hydrolase Family 102
Glycoside Hydrolase Family 103
Glycoside Hydrolase Family 104
Glycoside Hydrolase Family 109
Glycoside Hydrolase Family 110
Glycoside Hydrolase Family 112
Glycoside Hydrolase Family 113
Glycoside Hydrolase Family 115
Glycoside Hydrolase Family 116
Glycoside Hydrolase Family 117
Glycoside Hydrolase Family 121
Glycoside Hydrolase Family 124
Glycoside Hydrolase Family 125
Glycoside Hydrolase Family 127
Glycoside Hydrolase Family 129
Glycoside Hydrolase Family 131

Harry Brumer 19:57, 23 January 2010 (UTC)


  • Just display number of pages in two categories without a page list.
{{#dpl:
|category=Glycoside Hydrolase Families
|category=Curator approved
|resultsheader=\nThere are %TOTALPAGES% [[:Category:Curator approved]] GH pages.\n
|mode=userformat
}}


There are 94 Curator Approved GH pages.


Harry Brumer 14:01, 12 February 2010 (UTC)


Biblio character encoding problem

A couple of PMIDs seem to not work with the current Biblio.php script hack to switch the character encoding into UTF-8:

  • pmid=16533067 on the GH84 page (see History, June 30, 2010)
  • Markovic-Housley2000 pmid=11080624 on the Syn/anti lateral protonation page (see History, June 30, 2010)

Harry Brumer 12:24, 29 July 2010 (UTC)


Upgraded to MW1.16.0

  • Most everything works fine
  • Upgraded Extension:ParserFunctions
    • Extension:StringFunctions now folded into Extension:ParserFunctions, so required changes made in LocalSettings

Broken

Extension:WhoIsWatchingTabbed

Extension:WhoIsWatchingTabbed does not render the tab with the Vector skin

Extension:DynamicPageList2

Extension:DynamicPageList2 does not seem to work properly...

Harry Brumer 11:54, 11 August 2010 (CEST)

Testing Extension:Intersection again...

These both worked, but layout not quite as nice:

  • Simple bulleted linear list
<DynamicPageList>
category=Glycoside Hydrolase Families
category=Curator approved
ordermethod=categorysortkey
order=ascending
mode=unordered
</DynamicPageList>
  • Forcing 3 columns for 60 pages
<table>
<tr><th colspan="3"> recent articles </th></tr>
<tr><td>

<DynamicPageList>
category=Glycoside Hydrolase Families
category=Curator approved
ordermethod=categorysortkey
order=ascending
count=20
</DynamicPageList>
</td>
<td>
<DynamicPageList>
category=Glycoside Hydrolase Families
category=Curator approved
ordermethod=categorysortkey
order=ascending
offset=20
count=20
</DynamicPageList>
</td>
<td>

<DynamicPageList>
category=Glycoside Hydrolase Families
category=Curator approved
ordermethod=categorysortkey
order=ascending
offset=40
count=20
</DynamicPageList>
</td></tr></table>

DPL2 and Intersection can't be run at the same time; DPL2 recognizes <DynamicPageList> tags and tries to work on the code, with syntax errors.

Harry Brumer 12:31, 11 August 2010 (CEST)

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