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  • Glycoside Hydrolase Family 107
    ...right|350px|Figure 2: ''Psychromonas sp.'' GH107 global structure (PDB: [{{PDBlink}}6m8n 6m8n]).]] ...ght|350px|Figure 3: ''Psychromonas sp.'' GH107 catalytic residues (PDB: [{{PDBlink}}6m8n 6m8n]).]]
    4 KB (597 words) - 14:19, 18 December 2021
  • Glycoside Hydrolase Family 125
    ...Blink}}3p2c 3p2c]) and one GH125 from ''Bacteroides thetaiotaomicron'' ([{{PDBlink}}2p0v 2p0v]) are notable as they were the first deposited structures for me ...es'' sp. proteins ([{{PDBlink}}3on6 3on6], [{{PDBlink}}3p2c 3p2c], and [{{PDBlink}}2p0v 2p0v]). These structures were determined by the Structural Genomics C
    5 KB (663 words) - 14:38, 18 December 2021
  • Carbohydrate Esterase Family 15
    ...s0 6GS0]), and (C) ''Tt''CE15A from ''Teredinibacter turnerae'' (PDB ID [{{PDBlink}}6hsw 6HSW]) are shown in cartoon representation. The catalytic triad in ea ...similar structure of the fungal ''Cu''GE from ''Cerrena unicolor'' (PDB [{{PDBlink}}6rv9 6rv9]).
    6 KB (809 words) - 08:42, 16 August 2023
  • Glycoside Hydrolase Family 144
    ...[{{PDBlink}}5gzh 5GZH] and [{{PDBlink}}5gzk 5GZK]) and BDI_3064 (PDB ID [{{PDBlink}}5z06 5Z06]) were determined by X-ray crystallography and revealed the (α/ ...'' species (PDB IDs [{{PDBlink}}3eu8 3EU8], [{{PDBlink}}4gl3 4GL3], and [{{PDBlink}}4qt9 4QT9]) were deposited in the PDB database before the deposition of th
    6 KB (775 words) - 22:06, 1 February 2024
  • Glycoside Hydrolase Family 79
    ...enzyme of GH79 (PDB IDs [{{PDBlink}}3vny 3vny], [{{PDBlink}}3vnz 3vnz], [{{PDBlink}}3vo0 3vo0]) <cite> Michikawa2012 </cite>. The catalytic domain of the enzy ...-glucuronidase (PDB IDs [{{PDBlink}}3vny 3vny], [{{PDBlink}}3vnz 3vnz], [{{PDBlink}}3vo0 3vo0]) <cite> Michikawa2012 </cite>.
    4 KB (515 words) - 14:17, 18 December 2021
  • Polysaccharide Lyase Family 2
    ...acturonate ([{{PDBlink}}2v8k PDB 2v8k], 2.1 Å) and a transition metal ([{{PDBlink}}2v8j PDB 2v8j], 2.01 Å). Family 2 PLs adopt a rare &alpha;/&alpha;<sub>7< ...ott2007</cite> ([{{PDBlink}}2v8i PDB 2v8i], [{{PDBlink}}2v8j PDB 2v8j], [{{PDBlink}}2v8k PDB 2v8k]).
    5 KB (674 words) - 14:17, 18 December 2021
  • Carbohydrate Binding Module Family 42
    ...515 ''Clostridium thermocellum''] (&beta;-subdomain is non-functional) ([{{PDBlink}}3kmv 3kmv]) <cite>Ribeiro2010</cite>. ...h arabinose as a full-length structure with a catalytic [[GH54]] domain [{{PDBlink}}1wd4 1wd4] <cite>Miyanaga2004</cite>.
    6 KB (815 words) - 14:14, 18 December 2021
  • Glycoside Hydrolase Family 164
    ...DBlink}}6T5O 6T5O], [{{PDBlink}}6T75 6T75], [{{PDBlink}}6T7G 6T7G], and [{{PDBlink}}6T6G 6T6G].'']] ...6T6G]), and as a covalent 2-deoxy-2-fluoromannosyl-enzyme intermediate ([{{PDBlink}}6T75 PDB ID 6T75]). Bs164 exists as a donut shaped trimer (Figure 1A). Eac
    5 KB (663 words) - 14:19, 18 December 2021
  • User:Mario Murakami
    [{{PDBlink}}6UAQ PDB ID 6UAQ] - Subgroup I endo-beta-1,3-glucanase from ''Amycolatopsi [{{PDBlink}}6UAR PDB ID 6UAR] - AmGH128_I in complex with laminaritriose
    12 KB (1,725 words) - 06:10, 22 June 2020
  • Surface Binding Site
    ...''Figure 1. The barley α-amylase 1 in complex with maltoheptaose PDB ID [{{PDBlink}}1rp8 1rp8]''' <cite>Robert2005</cite>. Several of the key SBS residues are |[[GH1]]||2||[{{PDBlink}}1uyq 1uyq]||Unpublished
    7 KB (1,028 words) - 14:17, 18 December 2021
  • Carbohydrate Binding Module Family 9
    ...rom ''Caldicellulosiruptor kristjanssonii'' with cellotriose as ligand ([{{PDBlink}}7nwq PDB 7nwq]) <cite>Krska2021</cite>.]] ...o PDB 7nwo]), cellobiose ([{{PDBlink}}7nwp PDB 7nwp]), and cellotriose ([{{PDBlink}}7nwq PDB 7nwq]) <cite>Krska2021</cite>) the binding pose was however not a
    6 KB (873 words) - 04:37, 31 August 2023
  • Carbohydrate Binding Module Family 71
    [[File:CBM71-1.png|thumb|300px|right|'''Figure 1.''' Structure of CBM71-1 ([{{PDBlink}}4CUB 4CUB]). Cartoon representation of CBM71-1 in complex with LacNAc (gre ...71-1CatSite.png|thumb|300px|right|'''Figure 2.''' CBM71-1 binding site ([{{PDBlink}}4CUB 4CUB]). Residues involved in binding LacNAc (green) are shown as cyan
    4 KB (576 words) - 14:14, 18 December 2021
  • Carbohydrate Binding Module Family 28
    ...ith CBM17 ([{{PDBlink}}1j84 1j84]) <cite>Notenboom2011</cite> and CBM4 ([{{PDBlink}}1gu3 1gu3]) <cite>Boraston2002-2</cite>. Sugars of cellooligosaccharides ( ...n open cleft. '''Figure 1''' shows the cellopentaose complex structure ([{{PDBlink}}3aci 3aci]) of CBM28 in [[GH5]] Cel5A from [http://www.ncbi.nlm.nih.gov/Ta
    6 KB (846 words) - 14:15, 18 December 2021
  • Carbohydrate Binding Module Family 94
    ...olution structure of ''B. mori'' CBM94 in complex with β-GlcNAc (PDB ID [{{PDBlink}}7XTN 7XTN]) indicates that Tyr429, Trp445, Asp480, and Trp535 contribute t ...mori'' GnT-IV ortholog CBM94 in complex with GlcNAc (''magenta'' stick) [{{PDBlink}}7XTN 7XTN]. ]]
    6 KB (861 words) - 01:53, 13 April 2023
  • Glycoside Hydrolase Family 89
    ...structure and surface representation of the ''C. perfringens'' CpGH89 [{{PDBlink}}4a4a 4a4a] double catalytic mutant Michaelis complex <cite>Ficko-Blean-Mic ...ichaelis-complex2012</cite>. The structure of the human enzyme NAGLU, [{{PDBlink}}4xwh 4xwh], was released in 2019 <cite>Birrane2019</cite>.
    7 KB (872 words) - 14:38, 18 December 2021
  • Carbohydrate Esterase Family 2
    ...rtate from completing the triad <cite>Montanier2009</cite>. ''Cj''CE2A ([{{PDBlink}}2WAA PDB ID 2WAA]) is an exception, as it has a functioning catalytic tria ...ng||thumb|300px|right|'''Figure 1.''' ''Cj''CE2B from ''C. japonicus'' ([{{PDBlink}}2W9X PDB ID 2W9X]) ]]
    10 KB (1,440 words) - 14:18, 18 December 2021
  • Carbohydrate Binding Module Family 6
    ...the CBM6 from ''Cellvibrio mixtus'' <cite>Henshaw2004;Pires2004</cite> ([{{PDBlink}}1uxz PDB 1uxz]). An updated list of all available three-dimensional struct ...gand was determined for the CsCBM6-3 from ''Clostridium stercorarium'' ([{{PDBlink}}1o8p PDB 1o8p])<cite>Boraston2003</cite>.
    7 KB (1,039 words) - 14:15, 18 December 2021
  • Glycoside Hydrolase Family 188
    ...p. strain U41 SqgA (PDB [{{PDBlink}}8QC3 8QC3], [{{PDBlink}}8QC6 8QC6], [{{PDBlink}}8QC5 8QC5]) <cite>#Kaur2024</cite>. Each enzyme possesses an N-terminal d
    5 KB (629 words) - 10:33, 19 December 2023
  • Glycoside Hydrolase Family 48
    File:1FAE.jpg|PDB ID [{{PDBlink}}1fae 1fae] from "Crystal structure of the cellulase CEL48F from ''C. cellu File:1L1Y.jpg|PDB ID [{{PDBlink}}1l1y 1l1y] and [{{PDBlink}}1l2a 1l2a] from "The Crystal Structure and Catalytic Mechanism of Cellobio
    8 KB (1,081 words) - 14:20, 18 December 2021
  • Glycoside Hydrolase Family 136
    ...82 Å (PDB ID [{{PDBlink}}5GQF 5GQF]), and GNB complex at 2.70 Å (PDB ID [{{PDBlink}}5GQG 5GQG]) were determined <cite>chihaya2017</cite>. The X-ray crystal structure of '' Er''GH136 in complex with LNB (PDB ID [{{PDBlink}}6KQT 6KQT]) revealed the N-terminal domain (''Er''Lnb136I, from AA 7-224)
    4 KB (566 words) - 12:57, 25 June 2023
  • Carbohydrate Binding Module Family 16
    ...ldanaerobius polysaccharolyticus'' ManA, in complex with cellopentaose, [{{PDBlink}}2zex PDB ID 2zex]. Four key residues of the binding cleft are highlighted ...as well as two stretches of polar residues on both sides of the cleft, [{{PDBlink}}2zew PDB ID 2zew] <cite>Bae2008</cite>. Affinity studies of targeted muta
    5 KB (714 words) - 14:16, 18 December 2021
  • Carbohydrate Binding Module Family 50
    ...Blink}}1e0g 1e0g] <cite>Bateman2000</cite>, [{{PDBlink}}2mkx 2mkx] and [{{PDBlink}}4pxv 4pxv]). The CBM50 modules have a βααβ fold with the two helices p ...coli'' membrane-bond lytic murein transglycosylase D (MltD) (PDB entry: [{{PDBlink}}1e0g 1e0g]) by NMR spectroscopy <cite>Bateman2000</cite>.
    5 KB (634 words) - 14:19, 18 December 2021
  • Glycoside Hydrolase Family 78
    ...e has revealed key active-site details (PDB IDs [{{PDBlink}}3w5m 3w5m], [{{PDBlink}}3w5n 3w5n]) <cite>Fujimoto2013</cite>. More recently, the crystal structur ...-D structure: ''Bacillus'' sp. GL1 α-L-rhamnosidase B (BsRhaB) (PDB IDs [{{PDBlink}}2okx 2okx]) <cite>Cui2007</cite>.
    5 KB (659 words) - 14:14, 18 December 2021
  • Polysaccharide Lyase Family 8
    ...itin AC lyase (EC 4.2.2.5) - ''F. heparinum'' <cite>Fethiere1999</cite>([{{PDBlink}}1cb8 PDB 1CB8]).<br/> ...roitin ABC lyase (EC 4.2.2.20) – ''P. vulgaris'' <cite>Huang2003</cite>([{{PDBlink}}1hn0 PDB 1HN0]).<br/>
    5 KB (690 words) - 14:18, 18 December 2021
  • Carbohydrate Esterase Family 3
    ...g|thumb|300px|Figure 1:''Tc''AE206 from ''Talaromyces cellulolyticus'' ([{{PDBlink}}5B5S PDB ID 5B5S]). Colours correspond to α-helices (cyan), β-sheets (ma ..., respectively <cite>Correia2008</cite>. In other studies, ''Tc''AE206 ([{{PDBlink}}5B5S PDB ID 5B5S]) was not assayed against acetylated xylan, but the ''k''
    7 KB (1,000 words) - 14:16, 18 December 2021
  • Polysaccharide Lyase Family 9
    ...ht|'''Figure 1.''' '''BT4170 ([{{PDBlink}}5OLR PDB ID 5OLR]) and Pel9A ([{{PDBlink}}1RU4 PDB ID 1RU4]) active site'''. Superimposed active residues of BT4170 ...00px|right|'''Figure 2.''' '''Pel9A in complex with Ca<sup>2+</sup>''' ([{{PDBlink}}1RU4 PDB ID 1RU4]) '''A.''' Schematic representation of Pel9A parallel β-
    5 KB (702 words) - 14:19, 18 December 2021
  • Glycoside Hydrolase Family 29
    ...g/ Protein Data Bank] (PDB accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza]). Studies of Ssα-fuc demonstrated that mutation of the Glu res ...{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/b
    9 KB (1,247 words) - 14:19, 18 December 2021
  • Glycoside Hydrolase Family 105
    ...e residue in some GH105 enzymes (e.g. [{{PDBlink}}4CE7 PDB ID 4CE7] and [{{PDBlink}}5NOA PDB ID 5NOA]) <cite>Pettersen2004 Collen2014 Munoz-Munoz2017</cite>. ...e enzyme from the fungus ''Thielavia terrestris'' has also been solved ([{{PDBlink}}4XUV PDB ID 4XUV]). All of these enzymes share an (α/α)6-barrel structur
    9 KB (1,286 words) - 14:16, 18 December 2021
  • Glycoside Hydrolase Family 117
    ...d one is from the human gut bacterium ''Bacteroidetes plebeius'' (PDB: [{{PDBlink}}4ak5 4AK5]) <cite>Hehemann2012</cite>. ...or Zg4663) from the marine bacteria ''Zobellia galactanivorans'', PDB: [{{PDBlink}}3p2n 3p2n] <cite>Rebuffet2011</cite>.
    5 KB (742 words) - 14:14, 18 December 2021
  • Carbohydrate Binding Module Family 8
    ...ntation of the ''Dictyostelium discoideum'' DdCBM8 from the CelA enzyme [{{PDBlink}}7T7Z 7T7Z] showing the hydrophobic platform which is its predicted planar ...Ms <cite>Liberato2022</cite>. These residues align with the [[CBM29]]-2 [{{PDBlink}}1GWM 1GWM] binding site <cite>Charnock2002</cite>, the residues R634 and Q
    5 KB (716 words) - 08:00, 2 May 2024
  • Glycoside Hydrolase Family 66
    ...mo]), and in complex with 4’,5’-epoxypentyl α-D-glucopyranoside (PDB ID [{{PDBlink}}3vmp 3vmp]), have been solved <cite>Nsuzu2012</cite>. The catalytic domain A structure for a GH66 CITase-T3040 (PDB ID [{{PDBlink}}3wnk 3wnk]-[{{PDBlink}}3wno 3wno]) has been reported <cite>Nsuzu2014</cite>. CITase-T3040 has a s
    6 KB (819 words) - 14:18, 18 December 2021
  • Glycoside Hydrolase Family 72
    ...w61]) and in complex with carbohydrates ([{{PDBlink}}2w62 PDB ID 2w62], [{{PDBlink}}2w63 PDB ID 2w63]) (Figure 1). The enzyme folds as a (beta/alpha)<sub>8</
    6 KB (724 words) - 14:19, 18 December 2021
  • Carbohydrate Binding Module Family 14
    ...ange. B) Surface representation of ''Hs''CBM14. C) ''Cf''CBM14 (PDB ID: [{{PDBlink}}6BN0 6BN0]) cartoon representation. Residues involved in binding (Lys49, C ...f''CBM14 is the same as ''Hs''CBM14 (PDB ID: [{{PDBlink}}5HBF 5HBF] and [{{PDBlink}}6SO0 6SO0]) and other [http://www.cazy.org/CBM14_structure.html structural
    9 KB (1,186 words) - 14:20, 18 December 2021
  • Glycoside Hydrolase Family 109
    ...ent Ca-atoms for ''Zymomonas mobilis'' glucose-fructose oxidoreductase ([{{PDBlink}}1ofg PDB 1ofg]). More distant structural homologs are identified by means ...cetylgalactosaminidase <cite>1</cite> ([{{PDBlink}}2ixa PDB 2ixa]) and ([{{PDBlink}}2ixb PDB 2ixb]).
    5 KB (646 words) - 19:22, 15 December 2023
  • Polysaccharide Lyase Family 20
    ...'Figure 1:''' PL20 glucuronan lyase from ''Trichoderma reesei'' (PDB ID [{{PDBlink}}2zzj 2zzj]).]] ...rGL was the first PL20 structure to be reported ('''Figure 1''', PDB ID [{{PDBlink}}2zzj 2zzj], 1.8 &Aring; resolution) <cite>Konno2009b</cite>. TrGL has a ty
    3 KB (452 words) - 14:17, 18 December 2021
  • Glycoside Hydrolase Family 120
    ...3vst]), xylose (PDB ID [{{PDBlink}}3vsv 3vsv]), and xylobiose (PDB ID [{{PDBlink}}3vsu 3vsu]); in all three complexes the ligands bind at a similar locatio ;First 3-D structure: XylC from ''T. saccharolyticum'' (''e.g.'' PDB ID [{{PDBlink}}3vsu 3vsu]) <cite>Huang2012</cite>.
    6 KB (843 words) - 14:14, 18 December 2021
  • Carbohydrate Binding Module Family 65
    ...ubacterium cellulosolvens'' CBM65A ([{{PDBlink}}4AFM 4AFM]) and CBM65B ([{{PDBlink}}2YPJ 2YPJ]), solved using X-ray crystallography, display a beta-sandwich f ...x structure of a CBM65 were CBM65A ([{{PDBlink}}4AFM 4AFM]) and CBM65B ([{{PDBlink}}2YPJ 2YPJ]), respectively <cite>Luis2013</cite>.
    6 KB (856 words) - 14:16, 18 December 2021
  • Glycoside Hydrolase Family 35
    ...ectively (PDB codes [{{PDBlink}}3ogr 3ogr], [{{PDBlink}}3ogs 3ogs], and [{{PDBlink}}3ogv 3ogv], respectively) <cite>Maksimainen2010</cite>. ...7]), Tr-β-gal (PDB code [{{PDBlink}}3og2 3og2]) and Btm-β-gal (PDB code [{{PDBlink}}3d3a 3d3a]) are colored in green, brown and blue, respectively.]]
    10 KB (1,320 words) - 14:18, 18 December 2021
  • Glycoside Hydrolase Family 52
    ...''Geobacillus thermoglucosidasius'' in complex with xylobiose (orange)([{{PDBlink}}4C1P PDB ID 4C1P]).''' The active site is enclosed by residues from both m ...eractions between monomers of the GH52 from ''G. thermoglucosidasius'' ([{{PDBlink}}4C1P PDB ID 4C1P]) forming a deep pocket to enclose and distort the non-re
    7 KB (960 words) - 14:15, 18 December 2021
  • Carbohydrate Binding Module Family 86
    ...cture of the shallow binding site. C) Crystal structure of ''Ri''CBM86 ([{{PDBlink}}6SGF PDB: 6SGF]) with the four visible xylosyl residues of the xylohexaose ...mplex with xylohexaose was determined at a resolution of 1.8 Å in 2019 ([{{PDBlink}}6SGF PDB: 6SGF]) <cite>Leth2019</cite>. The structure is a β-sandwich fol
    5 KB (701 words) - 14:20, 18 December 2021
  • Glycoside Hydrolase Family 93
    ...1. Cartoon representation of the overall structure of Arb93A''' (PDB ID [{{PDBlink}}2w5o 2W5O] <cite>Carapito2009</cite>.The propeller is colored blue to red ...y for deoxyiminoarabinobiose bound to the active site of Arb93A (PDB ID [{{PDBlink}}2ydt 2YDT] <cite>GoddardBorger2011</cite>.''' Hydrogens bond are represent
    5 KB (676 words) - 09:17, 5 March 2019
  • Carbohydrate Binding Module Family 89
    ...ture, connecting the 11<sup>th</sup> and 12<sup>th</sup> helical turns ([{{PDBlink}}7jvi PDB 7JVI]). The role of the ion seems to be only related to the domai ;First Structural Characterization: The first CBM89 structure is [{{PDBlink}}7jvi PDB 7JVI], retrieved from the capybara gut microbiome <cite>Cabral202
    4 KB (538 words) - 03:21, 6 July 2023
  • Glycoside Hydrolase Family 8
    ...&Aring;) resolution structure of CelA in complex with substrate (PDB ID [{{PDBlink}}1kwf 1kwf]) has been determined <cite>Guerin2002</cite>. ...elA from ''Clostridium thermocellum'' by X-ray crystallography (PDB ID [{{PDBlink}}1cem 1cem]) <cite>Alzari1996</cite>.
    5 KB (653 words) - 14:15, 18 December 2021
  • Glycoside Hydrolase Family 162
    ...ucture.jpg|thumb|350px|'''Figure 3. Overall structure of ''Tf''SGL (PDB [{{PDBlink}}6IMU 6IMU]).''' ]]
    7 KB (996 words) - 20:03, 1 February 2024
  • Glycoside Hydrolase Family 82
    ...ucture belongs to the &beta;-helix fold ([{{PDBlink}}1h80 PDB 1h80] and [{{PDBlink}}1ktw PDB 1ktw]).
    4 KB (537 words) - 14:18, 18 December 2021
  • Glycoside Hydrolase Family 95
    ...[{{PDBlink}}2ead 2ead] E566A in complex with 2'-fucosyllactose, PDB ID [{{PDBlink}}2eae 2eae] D766A in complex with fucose and lactose) <cite>Nagae2007</cite
    6 KB (915 words) - 14:16, 18 December 2021
  • Glycoside Hydrolase Family 7
    ...the first endoglucanase, ''Fusarium oxysporum'' EG I (Cel7B), in 1996 ([{{PDBlink}}1ovw PDB 1ovw]) <cite>Sulzenbacher1996</cite>. The proteins are built up a ...up>1,4</sup><i>B</i> boat conformation is reqiured prior to hydrolysis ([{{PDBlink}}1ovw PDB 1ovw]) <cite>Sulzenbacher1996</cite>.
    8 KB (1,054 words) - 14:15, 18 December 2021
  • Carbohydrate Binding Module Family 81
    ...structure representation of CBM_E1 complexed with cellopentaose (PDB ID [{{PDBlink}}5kle 5KLE]), the first member of family CBM81.''' CBM_E1 presents a beta s ...e (PDB ID [{{PDBlink}}5klc 5KLC]) and presence of cellopentaose (PDB ID [{{PDBlink}}5kle 5KLE]), were obtained independent of the catalytic module <cite>Campo
    6 KB (812 words) - 14:17, 18 December 2021
  • Carbohydrate Binding Module Family 32
    ...ondary structure representation of the ''C. perfringens'' NagJ CpCBM32C [{{PDBlink}}2j1e 2J1e] showing the tryptophan platform, found in the terminal loop reg ...an2012</cite>, [{{PDBlink}}4a6o 4A6O] <cite>Ficko-Blean2012</cite>, and [{{PDBlink}}2w1u 2W1U] <cite>Ficko-Blean2009</cite>, to name just a few. An updated l
    10 KB (1,343 words) - 05:38, 25 August 2022
  • Carbohydrate Esterase Family 7
    ...Image:CAH Bsubtilis CE7.jpg|thumb|300px|Figure 1: CAH from B. subtilis ([{{PDBlink}}1ODS PDB ID 1ODS]). A) An individual monomer from the overall CAH struct ...-crystallized with PMSF and paraoxan ([{{PDBlink}}3M82 PDB ID 3M82] and [{{PDBlink}}3M83 PDB ID 3M83], respectively), two known serine protease inhibitors, th
    12 KB (1,657 words) - 14:18, 18 December 2021

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