Search results

Similar page title matches

• Template:PDBlink
  33 bytes (6 words) - 17:04, 9 April 2020

Page text matches

• Glycoside Hydrolase Family 107
  ...right|350px|Figure 2: ''Psychromonas sp.'' GH107 global structure (PDB: [{{PDBlink}}6m8n 6m8n]).]] ...ght|350px|Figure 3: ''Psychromonas sp.'' GH107 catalytic residues (PDB: [{{PDBlink}}6m8n 6m8n]).]]
  4 KB (597 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 125
  ...Blink}}3p2c 3p2c]) and one GH125 from ''Bacteroides thetaiotaomicron'' ([{{PDBlink}}2p0v 2p0v]) are notable as they were the first deposited structures for me ...es'' sp. proteins ([{{PDBlink}}3on6 3on6], [{{PDBlink}}3p2c 3p2c], and [{{PDBlink}}2p0v 2p0v]). These structures were determined by the Structural Genomics C
  5 KB (663 words) - 14:38, 18 December 2021
• Carbohydrate Esterase Family 15
  ...s0 6GS0]), and (C) ''Tt''CE15A from ''Teredinibacter turnerae'' (PDB ID [{{PDBlink}}6hsw 6HSW]) are shown in cartoon representation. The catalytic triad in ea ...similar structure of the fungal ''Cu''GE from ''Cerrena unicolor'' (PDB [{{PDBlink}}6rv9 6rv9]).
  6 KB (809 words) - 08:42, 16 August 2023
• Glycoside Hydrolase Family 144
  ...[{{PDBlink}}5gzh 5GZH] and [{{PDBlink}}5gzk 5GZK]) and BDI_3064 (PDB ID [{{PDBlink}}5z06 5Z06]) were determined by X-ray crystallography and revealed the (α/ ...'' species (PDB IDs [{{PDBlink}}3eu8 3EU8], [{{PDBlink}}4gl3 4GL3], and [{{PDBlink}}4qt9 4QT9]) were deposited in the PDB database before the deposition of th
  6 KB (775 words) - 22:06, 1 February 2024
• Glycoside Hydrolase Family 79
  ...enzyme of GH79 (PDB IDs [{{PDBlink}}3vny 3vny], [{{PDBlink}}3vnz 3vnz], [{{PDBlink}}3vo0 3vo0]) <cite> Michikawa2012 </cite>. The catalytic domain of the enzy ...-glucuronidase (PDB IDs [{{PDBlink}}3vny 3vny], [{{PDBlink}}3vnz 3vnz], [{{PDBlink}}3vo0 3vo0]) <cite> Michikawa2012 </cite>.
  4 KB (515 words) - 14:17, 18 December 2021
• Polysaccharide Lyase Family 2
  ...acturonate ([{{PDBlink}}2v8k PDB 2v8k], 2.1 Å) and a transition metal ([{{PDBlink}}2v8j PDB 2v8j], 2.01 Å). Family 2 PLs adopt a rare &alpha;/&alpha;<sub>7< ...ott2007</cite> ([{{PDBlink}}2v8i PDB 2v8i], [{{PDBlink}}2v8j PDB 2v8j], [{{PDBlink}}2v8k PDB 2v8k]).
  5 KB (674 words) - 14:17, 18 December 2021
• Carbohydrate Binding Module Family 42
  ...515 ''Clostridium thermocellum''] (&beta;-subdomain is non-functional) ([{{PDBlink}}3kmv 3kmv]) <cite>Ribeiro2010</cite>. ...h arabinose as a full-length structure with a catalytic [[GH54]] domain [{{PDBlink}}1wd4 1wd4] <cite>Miyanaga2004</cite>.
  6 KB (815 words) - 14:14, 18 December 2021
• Glycoside Hydrolase Family 164
  ...DBlink}}6T5O 6T5O], [{{PDBlink}}6T75 6T75], [{{PDBlink}}6T7G 6T7G], and [{{PDBlink}}6T6G 6T6G].'']] ...6T6G]), and as a covalent 2-deoxy-2-fluoromannosyl-enzyme intermediate ([{{PDBlink}}6T75 PDB ID 6T75]). Bs164 exists as a donut shaped trimer (Figure 1A). Eac
  5 KB (663 words) - 14:19, 18 December 2021
• User:Mario Murakami
  [{{PDBlink}}6UAQ PDB ID 6UAQ] - Subgroup I endo-beta-1,3-glucanase from ''Amycolatopsi [{{PDBlink}}6UAR PDB ID 6UAR] - AmGH128_I in complex with laminaritriose
  12 KB (1,725 words) - 06:10, 22 June 2020
• Surface Binding Site
  ...''Figure 1. The barley α-amylase 1 in complex with maltoheptaose PDB ID [{{PDBlink}}1rp8 1rp8]''' <cite>Robert2005</cite>. Several of the key SBS residues are |[[GH1]]||2||[{{PDBlink}}1uyq 1uyq]||Unpublished
  7 KB (1,028 words) - 14:17, 18 December 2021
• Carbohydrate Binding Module Family 9
  ...rom ''Caldicellulosiruptor kristjanssonii'' with cellotriose as ligand ([{{PDBlink}}7nwq PDB 7nwq]) <cite>Krska2021</cite>.]] ...o PDB 7nwo]), cellobiose ([{{PDBlink}}7nwp PDB 7nwp]), and cellotriose ([{{PDBlink}}7nwq PDB 7nwq]) <cite>Krska2021</cite>) the binding pose was however not a
  6 KB (873 words) - 04:37, 31 August 2023
• Carbohydrate Binding Module Family 71
  [[File:CBM71-1.png|thumb|300px|right|'''Figure 1.''' Structure of CBM71-1 ([{{PDBlink}}4CUB 4CUB]). Cartoon representation of CBM71-1 in complex with LacNAc (gre ...71-1CatSite.png|thumb|300px|right|'''Figure 2.''' CBM71-1 binding site ([{{PDBlink}}4CUB 4CUB]). Residues involved in binding LacNAc (green) are shown as cyan
  4 KB (576 words) - 14:14, 18 December 2021
• Carbohydrate Binding Module Family 28
  ...ith CBM17 ([{{PDBlink}}1j84 1j84]) <cite>Notenboom2011</cite> and CBM4 ([{{PDBlink}}1gu3 1gu3]) <cite>Boraston2002-2</cite>. Sugars of cellooligosaccharides ( ...n open cleft. '''Figure 1''' shows the cellopentaose complex structure ([{{PDBlink}}3aci 3aci]) of CBM28 in [[GH5]] Cel5A from [http://www.ncbi.nlm.nih.gov/Ta
  6 KB (846 words) - 14:15, 18 December 2021
• Carbohydrate Binding Module Family 94
  ...olution structure of ''B. mori'' CBM94 in complex with β-GlcNAc (PDB ID [{{PDBlink}}7XTN 7XTN]) indicates that Tyr429, Trp445, Asp480, and Trp535 contribute t ...mori'' GnT-IV ortholog CBM94 in complex with GlcNAc (''magenta'' stick) [{{PDBlink}}7XTN 7XTN]. ]]
  6 KB (861 words) - 01:53, 13 April 2023
• Glycoside Hydrolase Family 89
  ...structure and surface representation of the ''C. perfringens'' CpGH89 [{{PDBlink}}4a4a 4a4a] double catalytic mutant Michaelis complex <cite>Ficko-Blean-Mic ...ichaelis-complex2012</cite>. The structure of the human enzyme NAGLU, [{{PDBlink}}4xwh 4xwh], was released in 2019 <cite>Birrane2019</cite>.
  7 KB (872 words) - 14:38, 18 December 2021
• Carbohydrate Esterase Family 2
  ...rtate from completing the triad <cite>Montanier2009</cite>. ''Cj''CE2A ([{{PDBlink}}2WAA PDB ID 2WAA]) is an exception, as it has a functioning catalytic tria ...ng||thumb|300px|right|'''Figure 1.''' ''Cj''CE2B from ''C. japonicus'' ([{{PDBlink}}2W9X PDB ID 2W9X]) ]]
  10 KB (1,440 words) - 14:18, 18 December 2021
• Carbohydrate Binding Module Family 6
  ...the CBM6 from ''Cellvibrio mixtus'' <cite>Henshaw2004;Pires2004</cite> ([{{PDBlink}}1uxz PDB 1uxz]). An updated list of all available three-dimensional struct ...gand was determined for the CsCBM6-3 from ''Clostridium stercorarium'' ([{{PDBlink}}1o8p PDB 1o8p])<cite>Boraston2003</cite>.
  7 KB (1,039 words) - 14:15, 18 December 2021
• Glycoside Hydrolase Family 188
  ...p. strain U41 SqgA (PDB [{{PDBlink}}8QC3 8QC3], [{{PDBlink}}8QC6 8QC6], [{{PDBlink}}8QC5 8QC5]) <cite>#Kaur2024</cite>. Each enzyme possesses an N-terminal d
  5 KB (629 words) - 10:33, 19 December 2023
• Glycoside Hydrolase Family 48
  File:1FAE.jpg|PDB ID [{{PDBlink}}1fae 1fae] from "Crystal structure of the cellulase CEL48F from ''C. cellu File:1L1Y.jpg|PDB ID [{{PDBlink}}1l1y 1l1y] and [{{PDBlink}}1l2a 1l2a] from "The Crystal Structure and Catalytic Mechanism of Cellobio
  8 KB (1,081 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 136
  ...82 Å (PDB ID [{{PDBlink}}5GQF 5GQF]), and GNB complex at 2.70 Å (PDB ID [{{PDBlink}}5GQG 5GQG]) were determined <cite>chihaya2017</cite>. The X-ray crystal structure of '' Er''GH136 in complex with LNB (PDB ID [{{PDBlink}}6KQT 6KQT]) revealed the N-terminal domain (''Er''Lnb136I, from AA 7-224)
  4 KB (566 words) - 12:57, 25 June 2023
• Carbohydrate Binding Module Family 16
  ...ldanaerobius polysaccharolyticus'' ManA, in complex with cellopentaose, [{{PDBlink}}2zex PDB ID 2zex]. Four key residues of the binding cleft are highlighted ...as well as two stretches of polar residues on both sides of the cleft, [{{PDBlink}}2zew PDB ID 2zew] <cite>Bae2008</cite>. Affinity studies of targeted muta
  5 KB (714 words) - 14:16, 18 December 2021
• Carbohydrate Binding Module Family 50
  ...Blink}}1e0g 1e0g] <cite>Bateman2000</cite>, [{{PDBlink}}2mkx 2mkx] and [{{PDBlink}}4pxv 4pxv]). The CBM50 modules have a βααβ fold with the two helices p ...coli'' membrane-bond lytic murein transglycosylase D (MltD) (PDB entry: [{{PDBlink}}1e0g 1e0g]) by NMR spectroscopy <cite>Bateman2000</cite>.
  5 KB (634 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 78
  ...e has revealed key active-site details (PDB IDs [{{PDBlink}}3w5m 3w5m], [{{PDBlink}}3w5n 3w5n]) <cite>Fujimoto2013</cite>. More recently, the crystal structur ...-D structure: ''Bacillus'' sp. GL1 α-L-rhamnosidase B (BsRhaB) (PDB IDs [{{PDBlink}}2okx 2okx]) <cite>Cui2007</cite>.
  5 KB (659 words) - 14:14, 18 December 2021
• Polysaccharide Lyase Family 8
  ...itin AC lyase (EC 4.2.2.5) - ''F. heparinum'' <cite>Fethiere1999</cite>([{{PDBlink}}1cb8 PDB 1CB8]).<br/> ...roitin ABC lyase (EC 4.2.2.20) – ''P. vulgaris'' <cite>Huang2003</cite>([{{PDBlink}}1hn0 PDB 1HN0]).<br/>
  5 KB (690 words) - 14:18, 18 December 2021
• Carbohydrate Esterase Family 3
  ...g|thumb|300px|Figure 1:''Tc''AE206 from ''Talaromyces cellulolyticus'' ([{{PDBlink}}5B5S PDB ID 5B5S]). Colours correspond to α-helices (cyan), β-sheets (ma ..., respectively <cite>Correia2008</cite>. In other studies, ''Tc''AE206 ([{{PDBlink}}5B5S PDB ID 5B5S]) was not assayed against acetylated xylan, but the ''k''
  7 KB (1,000 words) - 14:16, 18 December 2021
• Polysaccharide Lyase Family 9
  ...ht|'''Figure 1.''' '''BT4170 ([{{PDBlink}}5OLR PDB ID 5OLR]) and Pel9A ([{{PDBlink}}1RU4 PDB ID 1RU4]) active site'''. Superimposed active residues of BT4170 ...00px|right|'''Figure 2.''' '''Pel9A in complex with Ca²⁺''' ([{{PDBlink}}1RU4 PDB ID 1RU4]) '''A.''' Schematic representation of Pel9A parallel β-
  5 KB (702 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 29
  ...g/ Protein Data Bank] (PDB accession numbers [{{PDBlink}}3eyp 3eyp] and [{{PDBlink}}3gza 3gza]). Studies of Ssα-fuc demonstrated that mutation of the Glu res ...{PDBlink}}1odu 1odu]) and of a glycosyl-enzyme [[intermediate]] (PDB ID [{{PDBlink}}1hl9 1hl9]) allowed the unambiguous identification of the [[general acid/b
  9 KB (1,247 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 105
  ...e residue in some GH105 enzymes (e.g. [{{PDBlink}}4CE7 PDB ID 4CE7] and [{{PDBlink}}5NOA PDB ID 5NOA]) <cite>Pettersen2004 Collen2014 Munoz-Munoz2017</cite>. ...e enzyme from the fungus ''Thielavia terrestris'' has also been solved ([{{PDBlink}}4XUV PDB ID 4XUV]). All of these enzymes share an (α/α)6-barrel structur
  9 KB (1,286 words) - 14:16, 18 December 2021
• Glycoside Hydrolase Family 117
  ...d one is from the human gut bacterium ''Bacteroidetes plebeius'' (PDB: [{{PDBlink}}4ak5 4AK5]) <cite>Hehemann2012</cite>. ...or Zg4663) from the marine bacteria ''Zobellia galactanivorans'', PDB: [{{PDBlink}}3p2n 3p2n] <cite>Rebuffet2011</cite>.
  5 KB (742 words) - 14:14, 18 December 2021
• Carbohydrate Binding Module Family 8
  ...ntation of the ''Dictyostelium discoideum'' DdCBM8 from the CelA enzyme [{{PDBlink}}7T7Z 7T7Z] showing the hydrophobic platform which is its predicted planar ...Ms <cite>Liberato2022</cite>. These residues align with the [[CBM29]]-2 [{{PDBlink}}1GWM 1GWM] binding site <cite>Charnock2002</cite>, the residues R634 and Q
  5 KB (716 words) - 08:00, 2 May 2024
• Glycoside Hydrolase Family 66
  ...mo]), and in complex with 4’,5’-epoxypentyl α-D-glucopyranoside (PDB ID [{{PDBlink}}3vmp 3vmp]), have been solved <cite>Nsuzu2012</cite>. The catalytic domain A structure for a GH66 CITase-T3040 (PDB ID [{{PDBlink}}3wnk 3wnk]-[{{PDBlink}}3wno 3wno]) has been reported <cite>Nsuzu2014</cite>. CITase-T3040 has a s
  6 KB (819 words) - 14:18, 18 December 2021
• Glycoside Hydrolase Family 72
  ...w61]) and in complex with carbohydrates ([{{PDBlink}}2w62 PDB ID 2w62], [{{PDBlink}}2w63 PDB ID 2w63]) (Figure 1). The enzyme folds as a (beta/alpha)<sub>8</
  6 KB (724 words) - 14:19, 18 December 2021
• Carbohydrate Binding Module Family 14
  ...ange. B) Surface representation of ''Hs''CBM14. C) ''Cf''CBM14 (PDB ID: [{{PDBlink}}6BN0 6BN0]) cartoon representation. Residues involved in binding (Lys49, C ...f''CBM14 is the same as ''Hs''CBM14 (PDB ID: [{{PDBlink}}5HBF 5HBF] and [{{PDBlink}}6SO0 6SO0]) and other [http://www.cazy.org/CBM14_structure.html structural
  9 KB (1,186 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 109
  ...ent Ca-atoms for ''Zymomonas mobilis'' glucose-fructose oxidoreductase ([{{PDBlink}}1ofg PDB 1ofg]). More distant structural homologs are identified by means ...cetylgalactosaminidase <cite>1</cite> ([{{PDBlink}}2ixa PDB 2ixa]) and ([{{PDBlink}}2ixb PDB 2ixb]).
  5 KB (646 words) - 19:22, 15 December 2023
• Polysaccharide Lyase Family 20
  ...'Figure 1:''' PL20 glucuronan lyase from ''Trichoderma reesei'' (PDB ID [{{PDBlink}}2zzj 2zzj]).]] ...rGL was the first PL20 structure to be reported ('''Figure 1''', PDB ID [{{PDBlink}}2zzj 2zzj], 1.8 &Aring; resolution) <cite>Konno2009b</cite>. TrGL has a ty
  3 KB (452 words) - 14:17, 18 December 2021
• Glycoside Hydrolase Family 120
  ...3vst]), xylose (PDB ID [{{PDBlink}}3vsv 3vsv]), and xylobiose (PDB ID [{{PDBlink}}3vsu 3vsu]); in all three complexes the ligands bind at a similar locatio ;First 3-D structure: XylC from ''T. saccharolyticum'' (''e.g.'' PDB ID [{{PDBlink}}3vsu 3vsu]) <cite>Huang2012</cite>.
  6 KB (843 words) - 14:14, 18 December 2021
• Carbohydrate Binding Module Family 65
  ...ubacterium cellulosolvens'' CBM65A ([{{PDBlink}}4AFM 4AFM]) and CBM65B ([{{PDBlink}}2YPJ 2YPJ]), solved using X-ray crystallography, display a beta-sandwich f ...x structure of a CBM65 were CBM65A ([{{PDBlink}}4AFM 4AFM]) and CBM65B ([{{PDBlink}}2YPJ 2YPJ]), respectively <cite>Luis2013</cite>.
  6 KB (856 words) - 14:16, 18 December 2021
• Glycoside Hydrolase Family 35
  ...ectively (PDB codes [{{PDBlink}}3ogr 3ogr], [{{PDBlink}}3ogs 3ogs], and [{{PDBlink}}3ogv 3ogv], respectively) <cite>Maksimainen2010</cite>. ...7]), Tr-β-gal (PDB code [{{PDBlink}}3og2 3og2]) and Btm-β-gal (PDB code [{{PDBlink}}3d3a 3d3a]) are colored in green, brown and blue, respectively.]]
  10 KB (1,320 words) - 14:18, 18 December 2021
• Glycoside Hydrolase Family 52
  ...''Geobacillus thermoglucosidasius'' in complex with xylobiose (orange)([{{PDBlink}}4C1P PDB ID 4C1P]).''' The active site is enclosed by residues from both m ...eractions between monomers of the GH52 from ''G. thermoglucosidasius'' ([{{PDBlink}}4C1P PDB ID 4C1P]) forming a deep pocket to enclose and distort the non-re
  7 KB (960 words) - 14:15, 18 December 2021
• Carbohydrate Binding Module Family 86
  ...cture of the shallow binding site. C) Crystal structure of ''Ri''CBM86 ([{{PDBlink}}6SGF PDB: 6SGF]) with the four visible xylosyl residues of the xylohexaose ...mplex with xylohexaose was determined at a resolution of 1.8 Å in 2019 ([{{PDBlink}}6SGF PDB: 6SGF]) <cite>Leth2019</cite>. The structure is a β-sandwich fol
  5 KB (701 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 93
  ...1. Cartoon representation of the overall structure of Arb93A''' (PDB ID [{{PDBlink}}2w5o 2W5O] <cite>Carapito2009</cite>.The propeller is colored blue to red ...y for deoxyiminoarabinobiose bound to the active site of Arb93A (PDB ID [{{PDBlink}}2ydt 2YDT] <cite>GoddardBorger2011</cite>.''' Hydrogens bond are represent
  5 KB (676 words) - 09:17, 5 March 2019
• Carbohydrate Binding Module Family 89
  ...ture, connecting the 11^th and 12^th helical turns ([{{PDBlink}}7jvi PDB 7JVI]). The role of the ion seems to be only related to the domai ;First Structural Characterization: The first CBM89 structure is [{{PDBlink}}7jvi PDB 7JVI], retrieved from the capybara gut microbiome <cite>Cabral202
  4 KB (538 words) - 03:21, 6 July 2023
• Glycoside Hydrolase Family 8
  ...&Aring;) resolution structure of CelA in complex with substrate (PDB ID [{{PDBlink}}1kwf 1kwf]) has been determined <cite>Guerin2002</cite>. ...elA from ''Clostridium thermocellum'' by X-ray crystallography (PDB ID [{{PDBlink}}1cem 1cem]) <cite>Alzari1996</cite>.
  5 KB (653 words) - 14:15, 18 December 2021
• Glycoside Hydrolase Family 162
  ...ucture.jpg|thumb|350px|'''Figure 3. Overall structure of ''Tf''SGL (PDB [{{PDBlink}}6IMU 6IMU]).''' ]]
  7 KB (996 words) - 20:03, 1 February 2024
• Glycoside Hydrolase Family 82
  ...ucture belongs to the &beta;-helix fold ([{{PDBlink}}1h80 PDB 1h80] and [{{PDBlink}}1ktw PDB 1ktw]).
  4 KB (537 words) - 14:18, 18 December 2021
• Glycoside Hydrolase Family 95
  ...[{{PDBlink}}2ead 2ead] E566A in complex with 2'-fucosyllactose, PDB ID [{{PDBlink}}2eae 2eae] D766A in complex with fucose and lactose) <cite>Nagae2007</cite
  6 KB (915 words) - 14:16, 18 December 2021
• Glycoside Hydrolase Family 7
  ...the first endoglucanase, ''Fusarium oxysporum'' EG I (Cel7B), in 1996 ([{{PDBlink}}1ovw PDB 1ovw]) <cite>Sulzenbacher1996</cite>. The proteins are built up a ...up>1,4</sup><i>B</i> boat conformation is reqiured prior to hydrolysis ([{{PDBlink}}1ovw PDB 1ovw]) <cite>Sulzenbacher1996</cite>.
  8 KB (1,054 words) - 14:15, 18 December 2021
• Carbohydrate Binding Module Family 81
  ...structure representation of CBM_E1 complexed with cellopentaose (PDB ID [{{PDBlink}}5kle 5KLE]), the first member of family CBM81.''' CBM_E1 presents a beta s ...e (PDB ID [{{PDBlink}}5klc 5KLC]) and presence of cellopentaose (PDB ID [{{PDBlink}}5kle 5KLE]), were obtained independent of the catalytic module <cite>Campo
  6 KB (812 words) - 14:17, 18 December 2021
• Carbohydrate Binding Module Family 32
  ...ondary structure representation of the ''C. perfringens'' NagJ CpCBM32C [{{PDBlink}}2j1e 2J1e] showing the tryptophan platform, found in the terminal loop reg ...an2012</cite>, [{{PDBlink}}4a6o 4A6O] <cite>Ficko-Blean2012</cite>, and [{{PDBlink}}2w1u 2W1U] <cite>Ficko-Blean2009</cite>, to name just a few. An updated l
  10 KB (1,343 words) - 05:38, 25 August 2022
• Carbohydrate Esterase Family 7
  ...Image:CAH Bsubtilis CE7.jpg|thumb|300px|Figure 1: CAH from B. subtilis ([{{PDBlink}}1ODS PDB ID 1ODS]). A) An individual monomer from the overall CAH struct ...-crystallized with PMSF and paraoxan ([{{PDBlink}}3M82 PDB ID 3M82] and [{{PDBlink}}3M83 PDB ID 3M83], respectively), two known serine protease inhibitors, th
  12 KB (1,657 words) - 14:18, 18 December 2021
• Carbohydrate Binding Module Family 66
  ...e 1.''' The crystal structure of BsCBM60 in complex with levanotriose ([{{PDBlink}}4B1M PDB ID 4B1M]), highlighting the location of the ligand binding site o ...n complex with fructose ([{{PDBlink}}4B1L PDB ID 4B1L]) or levantriose ([{{PDBlink}}4B1M PDB ID 4B1M]) the sugars were located in the broad pocket demonstrati
  7 KB (1,036 words) - 14:16, 18 December 2021
• Auxiliary Activity Family 11
  ...Quinlan2011</cite>) and ''Bacillus amyloliquefaciens'' [[AA10]] (PDB ID [{{PDBlink}}2yoy 2YOY] <cite>Hemsworth2013b</cite>) in the same orientation showing ho ...ture: AA11 from ''A. oryzae'' with Zn2+ [{{PDBlink}}4mah 4MAH] & Cu(I) [{{PDBlink}}4mai 4MAI] <cite>Hemsworth2013</cite>
  8 KB (1,155 words) - 14:14, 18 December 2021
• Glycoside Hydrolase Family 141
  ...e:BT1002.png|thumb|300px|right|'''Figure 1.''' '''BT1002 strucutre'''. ([{{PDBlink}}5MQP PDB ID 5PDB]) The figure shows the β-parallel catalytic domain (pur ...tructure has been determined for ''B. thetaiotaomicron'' BT1002 at 2 Å ([{{PDBlink}}5MQP PDB ID 5PDB]). The protein has two domains: a N-terminal β-sandwich
  4 KB (527 words) - 14:18, 18 December 2021
• Polysaccharide Lyase Family 22
  ...by YePL2A from ''Yersinia enterocolitica'' subsp. enterocolitica 8081 ([{{PDBlink}}3pe7 PDB 3PE7]), which was solved in complex with Mn²⁺ and acet ...VPA0088 from ''Vibrio parahaemolyticus'' RIMD 2210633 (''Unpublished:'' [{{PDBlink}}3c5m PDB 3C5M]).
  6 KB (743 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 64
  ...4A in complex with two laminarihexaose chains (forest, pale green).''' ([{{PDBlink}}5H9Y PDB ID 5H9Y]) The barrel domain is shown in light pink, the &alpha;/& ...inaritetraose-bound structure of LPHase from ''Streptoymces matensis'' ([{{PDBlink}}3GD9 PDB ID 3GD9]) reveals that the barrel domain mediates most of the int
  6 KB (816 words) - 14:19, 18 December 2021
• Polysaccharide Lyase Family 4
  ...alytically impaired variant with substrate bound from -3 to +3 subsites[[{{PDBlink}}3njv 3NJV]]have been also determined <cite>Jensen2010</cite>.
  7 KB (979 words) - 14:15, 18 December 2021
• Carbohydrate Binding Module Family 2
  ...the ''Cellulomonas fimi'' GH10 xylanase Xyn10A (also known as Cex)(see [{{PDBlink}}1exg PDB ID 1exg]) highlighting the three planar tryptophans that are opti ...The fold of the CBM2 in the ''Cellulomonas fimi'' GH11 xylanase Xyn11D ([{{PDBlink}}2xbd PDB ID 2xbd]) highlighting the two perpendicular tryptophans that are
  10 KB (1,463 words) - 14:14, 18 December 2021
• Carbohydrate Binding Module Family 60
  ...t|'''Figure 1.''' The fold of ''v''CBM60 in complex with galactobiose ([{{PDBlink}}2XFE PDB ID 2XFE]), highlighting the location of the ligand binding site f ...galactobiose (Figure 2; [{{PDBlink}}2XFE PDB ID 2XFE]) and cellotriose ([{{PDBlink}}2XFD PDB ID 2XFD]) are located in the cleft, which thus comprises the liga
  7 KB (1,077 words) - 14:18, 18 December 2021
• Carbohydrate Binding Module Family 5
  ...|'''Figure 1.''' CBM5 of an endoglucanase from ''Erwinia chrysanthemi'' [{{PDBlink}}1AIW PDB ID 1AIW] showing surface exposed aromatic residues (Trp18, Trp43 ...modules#Types|type A]] CBMs <cite>Gilbert2013</cite>. The ''Ec''EGZCBM5 [{{PDBlink}}1AIW PDB ID 1AIW] possesses three exposed aromatic residues: Trp18, Trp43
  8 KB (1,113 words) - 06:55, 2 May 2024
• Glycoside Hydrolase Family 36
  ...ogous domain in [[GH27]] (e.g., ''Oryza sativa'' &alpha;-galactosidase, [{{PDBlink}}1uas PDB 1uas]). Notably, an extra N-terminal, primarily &beta;-sheet dom ...aritima'' &alpha;-galactosidase by X-ray crystallography. Coordinates ([{{PDBlink}}1zy9 PDB 1zy9]) deposited in 2005 as part of a high-throughput functional
  7 KB (891 words) - 14:20, 18 December 2021
• Carbohydrate Binding Module Family 29
  ...ons with mannohexaose ([{{PDBlink}}1GWL PDB ID 1GWL]) and cellohexaose ([{{PDBlink}}1GWM PDB ID 1GWM]).]] ...erminal CBM29 of ''P. equi'' protein NCP1 in complex with cellohexaose ([{{PDBlink}}1OH3 PDB ID 1OH3]).The figure highlights the aromatic residues from the tw
  6 KB (912 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 13
  ...ID [{{PDBlink}}1m7x 1m7x]) and debranching <cite>Woo2008</cite> (PDB ID [{{PDBlink}}2vnc 2vnc]) enzymes. ...e as demonstrated by kinetics analysis <cite>Rydberg2002</cite> (PDB ID [{{PDBlink}}1kbb 1kbb]).
  19 KB (2,418 words) - 14:18, 18 December 2021
• Carbohydrate Binding Module Family 46
  ...y in the context of the full length enzyme shown in '''Figure 1''' (see [{{PDBlink}}4v2x PDB ID 4v2x]) <cite>Venditto2015</cite>.
  5 KB (712 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 106
  ...e:BT0986_1.png|thumb|300px|right|'''Figure 2.''' '''BT0986 structure'''([{{PDBlink}}5MQN 5MQN]). The figure shows the (β/α)₈-barrel domain (1, ye ...-ray crystallography represents the first structure of an GH106 enzyme ([{{PDBlink}}5MQN 5MQN]). BT0986 displays a N-terminal catalytic domain that presents a
  5 KB (657 words) - 14:15, 18 December 2021
• Carbohydrate Binding Module Family 79
  ...l structure of CBM79-1_RfGH9. ([{{PDBlink}}4V1L PDB ID 4V1L], [{{PDBlink}}4V1K PDB ID 4V1K]). The aromatic residues that contribute to ligand recogn
  6 KB (842 words) - 14:19, 18 December 2021
• Carbohydrate Binding Module Family 10
  ...e 1.''' The fold of the CBM10 module from ''C. japonicus'' Xyn10A (see [{{PDBlink}}1E8R PDB ID 1E8R]) highlighting the three planar aromatic residues.]] ...'Cellvibrio japonicus'' GH10 xylanase Xyn10A was determined by NMR (see [{{PDBlink}}1E8R PDB ID 1E8R]) <cite>Raghothama2000</cite>. The proteins displays a
  5 KB (764 words) - 14:20, 18 December 2021
• Carbohydrate Binding Module Family 63
  ...ure 1''' The crystal structure of BsEXLX1 in complex with cellohexaose ([{{PDBlink}}4FER 4FER]). (A) Cellohexaose is shown sandwiched between two expansins, w ...e ''Phleum'' pollen allergens PhlP2 ([{{PDBlink}}1who 1WHO]) and PhlP3 ([{{PDBlink}}3ft9 3FT9]) are evolutionarily derived from plant β-expansins and are hom
  13 KB (1,789 words) - 14:15, 18 December 2021
• Glycoside Hydrolase Family 63
  ...t crystal structure of the eukaryotic processing &alpha;-glucosidase I ([{{PDBlink}}4j5t PDB 4j5t]) has been reported in 2013 <cite>Barker2013</cite>.
  6 KB (785 words) - 23:00, 11 July 2023
• Glycoside Hydrolase Family 77
  ...Jung2011</cite>; and (ii) the D-enzyme from potato (unpublished; PDB ID [{{PDBlink}}1x1n 1x1n]). The crystallization of the amylomaltase from ''Corynebacteriu ...as2000a</cite> and subsequently also as a complex with acarbose (PDB ID [{{PDBlink}}1esw 1esw]) <cite>Przylas2000b</cite>.
  10 KB (1,359 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 85
  ...''': ''S. pneumoniae TIGR4'' Endo-D PDB IDs: [{{PDBlink}}2w91 2w91] and [{{PDBlink}}2w92 2w92] (release date: 2009-01-27)<cite>#5</cite>.
  6 KB (734 words) - 14:19, 18 December 2021
• Carbohydrate Binding Module Family 91
  ...ily 43 glycoside hydrolase from ''Clostridium acetobutylicum'' ATCC 824 [{{PDBlink}}1Y7B PDB ID 1Y7B].
  2 KB (335 words) - 07:11, 23 April 2024
• Glycoside Hydrolase Family 16
  ...a ''[[endo]]''-1,3-&beta;-glucanase Lam16 from ''Pyrococcus furiosus'' ([{{PDBlink}}2vy0 PDB 2vy0]) <cite>Ilari2009</cite>. ...quefaciens'' and ''Paenibacillus macerans'') by X-ray crystallography ([{{PDBlink}}1byh PDB 1byh]) <cite>Keitel1993</cite>.
  10 KB (1,349 words) - 14:18, 18 December 2021
• Carbohydrate Binding Module Family 44
  ...modular cellulase ''Ct''Cel9D-Cel44A from ''Acetivibrio thermocellus'' ([{{PDBlink}}2c26 PDB 2c26]) <cite>Najmudin2006</cite>. The PKD domain is shown in oran ...presents the first structurally characterized candidate of this family ([{{PDBlink}}2c26 PDB 2c26]) <cite>Najmudin2006</cite>.
  6 KB (784 words) - 01:25, 11 January 2023
• Auxiliary Activity Family 3
  ...Blink}}5hsa 5HSA]); E, glucose oxidase from ''Aspergillus niger'' (pdb: [{{PDBlink}}4cf4 4CF4]). The GMC-oxidoreductase α/β-fold is colour-coded.]]
  17 KB (2,271 words) - 14:17, 18 December 2021
• Carbohydrate Binding Module Family 20
  ...]] glucoamylase with β-cyclodextrin bound to both binding sites (PDB ID [{{PDBlink}}1ac0 1AC0] <cite>Sorimachi1997</cite>). The prominent binding site residue ...re of the [[GH13]] CGTase from <i>Bacillus circulans</i> 251 (PDB entry [{{PDBlink}}1cdg 1CDG]) <cite>Lawson1994</cite>.
  8 KB (1,174 words) - 14:24, 18 December 2021
• Glycosyltransferase Family 37
  ...nk}}5KWK PDB ID 5KWK] <cite>Urbanowicz2017</cite>, and XXLG-GDP complex [{{PDBlink}}5KOR PDB ID 5KOR] <cite>Rocha2016</cite>) are available in PDB.
  9 KB (1,236 words) - 13:47, 21 February 2024
• Polysaccharide Lyase Family 1
  ...cting ''Bacillus subtilis'' pectate lyase <cite>Pickersgill1994</cite> ([{{PDBlink}}1bn8 1BN8]). These PL1 structures are remarkable in showing the polypeptid
  6 KB (858 words) - 14:16, 18 December 2021
• Glycoside Hydrolase Family 81
  ...b|right|'''Figure 1. Structure of Lam81A from ''Rhizomucor meihei''''' ([{{PDBlink}}4K3A PDB ID 4K3A]). Domain A (blue) and Domain C (green) comprise the core ...sts that GH81 are capable of binding helical forms of &beta;-glucan''' ([{{PDBlink}}5T4G PDB ID 5T4G]). The triple helical structure of curdlan (beige, yellow
  6 KB (851 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 19
  ...ng the catalytic acid, Glu67, in the family 19 papaya chitinase (PDB ID [{{PDBlink}}3cql 3cql]).''' Amino acid side chains are shown in stick representation. ...D [{{PDBlink}}1cns 1cns])and ChiG from ''S. coelicolor'' (right; PDB ID [{{PDBlink}}2cjl 2cjl]).''' The side chains of the catalytic acids are shown in green.
  9 KB (1,211 words) - 14:19, 18 December 2021
• Carbohydrate Binding Module Family 49
  ...in stick. The [[CBM2]] NMR template used for model prediction (PDB ID [{{PDBlink}}1exg 1EXG]) is shown in red. This figure was adapted from <cite>Urbanowic ...g [[CBM2]] NMR template from ''Cellulomonas fimi'' xylanase 10A (PDB ID [{{PDBlink}}1exg 1EXG]), closely matched the features of the β-barrel fold of the par
  7 KB (923 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 3
  ...zyz 3ZYZ]); ''Streptomyces venezuelae'' β-glucosidase DesR (blue) (PDB [{{PDBlink}}4i3g 4I3G]).]] ...th the two-domain GH3 NagZ from ''B. subtilis'' (BsNagZ) (yellow) (PDB [{{PDBlink}}3bmx 3BMX]). '''GH3 NagZ enzymes contain a conserved histidine/aspartate
  23 KB (3,036 words) - 16:19, 6 January 2023
• Syn/anti lateral protonation
  | [{{PDBlink}}2cer 2cer] | [{{PDBlink}}2vzu 2vzu]
  38 KB (4,358 words) - 00:29, 26 October 2023
• Glycoside Hydrolase Family 76
  ...wed the disaccharide binding in the -3/-2 subsites (unpublished, PDB ID [{{PDBlink}}4boj 4boj]). Several inhibitor complexes have been reported. A complex wit ...ure of a GH76 enzyme: ''Listeria innocua'' Lin0763 (unpublished, PDB ID [{{PDBlink}}3k7x 3k7x])
  7 KB (949 words) - 04:00, 5 May 2022
• Auxiliary Activity Family 13
  ...x|'''Figure 1. Structure of AA13 from <i>Aspergillus oryzae</i> (PDB ID [{{PDBlink}}4opb 4OPB] <cite>LoLeggio2015</cite>).''' In the above animation the struc ...e site architecture observed for the AA13 from <i>A. oryzae</i> (PDB ID [{{PDBlink}}4opb 4OPB] <cite>LoLeggio2015</cite>).''' '''Top:''' the active site resid
  10 KB (1,453 words) - 14:16, 18 December 2021
• Glycoside Hydrolase Family 57
  ...r with the three-dimensional structure <cite>Imamura2003</cite> (PDB ID [{{PDBlink}}1k1w 1k1w]) that revealed the [[general acid/base]] residue (Asp214). ...ing) amylase from ''Pyrococcus'' sp. ST04 <cite>Park2014</cite> (PDB ID [{{PDBlink}}4cmr 4cmr]). In all cases, the catalytic glutamic acid and aspartic acid r
  16 KB (2,110 words) - 03:08, 26 February 2024
• Glycoside Hydrolase Family 12
  ...s lividans'' CelB2 in complex with a 2-deoxy-2-fluorocellotrioside (PDB [{{PDBlink}}2nrl 2NLR]). ''' Two distinct species were modelled in the structure: the ...se XG12 from ''Bacillus licheniformis'' in complex with xyloglucan (PDB [{{PDBlink}}}2jen 2JEN]).''' &alpha;-1,6-xylose substitutions are present at subsites
  10 KB (1,329 words) - 14:18, 18 December 2021
• Carbohydrate Binding Module Family 35
  ...|'''Figure 1.''' The fold of UA-CBM35 in complex with glucuronic acid ([{{PDBlink}}2W87 PDB ID 2W87]), highlighting the location of the ligand binding site f ...site of BcCBM35-1 ([{{PDBlink}}3WMN PDB ID 3WMN]; green) and BcCBM35-2 ([{{PDBlink}}5X7Q PDB ID 5X7Q]; cyan) in complex with &alpha;1,6- (green) and &alpha;1,
  12 KB (1,761 words) - 14:15, 18 December 2021
• Glycoside Hydrolase Family 55
  ...the bacterial enzyme SacteLam55A complexed with laminarihexaose (PDB ID [{{PDBlink}}4pf0 4pf0]), together with kinetic analysis of site-directed mutants, reve
  8 KB (1,059 words) - 14:15, 18 December 2021
• Glycoside Hydrolase Family 9
  ...stridium thermocellum'' was determined by X-ray crystallography (PDB ID [{{PDBlink}}1clc 1clc]) <cite>Lascombe1995</cite>. ...glucanase D at 1.9 Angstroms Resolution. Deposited 1995, unpublished. [{{PDBlink}}1clc PDB ID 1clc]
  7 KB (976 words) - 14:18, 18 December 2021
• Glycoside Hydrolase Family 121
  ...s &beta;-L-arabinobiosidase HypBA2 from ''Bifidobacterium longum'' (PDB [{{PDBlink}}6m5a 6M5A]) <cite>Saito2020</cite>. The catalytic domain adops an (&alpha;
  3 KB (449 words) - 14:18, 18 December 2021
• Auxiliary Activity Family 10
  ...ing a reduced copper ion bound to the active site [{{PDBlink}}2yoy 2YOY][{{PDBlink}}2yox 2YOX], thus being the first AA10 structures with a copper ion bound i ...e LPMO from the Gram negative bacterium ''Serratia marcescens'', PDB ID [{{PDBlink}}2bem 2BEM].
  19 KB (2,813 words) - 14:14, 18 December 2021
• Carbohydrate Binding Module Family 100
  The 1.55 Å resolution X-ray crystal structure of PhCBM100 ([{{PDBlink}}8jiy PDB 8jiy]) exhibited a β-sandwich fold formed of 10 β-strands and
  3 KB (489 words) - 01:40, 16 February 2024
• Glycoside Hydrolase Family 129
  ...ha;-amylase 1 (TVAI) from ''Thermoactinomyces vulgaris'' R-47 (PDB code [{{PDBlink}}1JI1 1JI1]) as a template <cite>Kiyohara2012a</cite>. Asp330 in NagBb may
  4 KB (463 words) - 14:15, 18 December 2021
• Glycoside Hydrolase Family 112
  ...tosyl-D-hexososamine phosphorylase from ''Bifidobacterium longum'' (PDB [{{PDBlink}}2zuv 2ZUV] in complex with GlcNAc, ethylene glycol, and nitrate) <cite>Hid
  4 KB (489 words) - 14:15, 18 December 2021
• Glycoside Hydrolase Family 146
  ...wich domains in cyan, magenta and yellow from the N- to the C-terminus ([{{PDBlink}}5OPJ PDB ID 5OPJ]). The arabinose bound in the active site is shown in red
  4 KB (583 words) - 14:20, 18 December 2021
• Carbohydrate Binding Module Family 3
  ...se binding CBM3a from the ''Clostridium thermocellum'' scaffoldin CipA ([{{PDBlink}}1NBC PDB ID 1NBC]), highlighting the planar ligand binding site comprising ...5; &beta;-sheet 2) &beta; strands, respectively <cite>Tormo1996</cite> ([{{PDBlink}}1NBC PDB ID 1NBC]). &beta;-sheet 1 forms a flat surface that contains a li
  8 KB (1,162 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 49
  ...x49A) from ''Talaromyces minioluteum'' by X-ray crystallography (PDB ID [{{PDBlink}}1ogm 1ogm]) <cite>Larsson2003</cite>.
  4 KB (567 words) - 20:08, 13 April 2023
• Glycoside Hydrolase Family 94
  [PDB ID [{{PDBlink}}1v7x 1v7x] in complex with GlcNAc and sulfate ) <cite>Hidaka2004</cite>. T
  4 KB (557 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 134
  ;First 3-D structure: ''Ss''GH134 from ''Streptomyces'' sp. (PDB ID [{{PDBlink}}5JTS 5JTS]) <cite>Jin2016</cite>.
  4 KB (561 words) - 14:18, 18 December 2021
• Carbohydrate Binding Module Family 80
  The three-dimensional structure of CBM80_RfGH5-1/2 ([{{PDBlink}}5fu3 5fu3]) was solved using single-wavelength anomalous diffraction (SAD)
  5 KB (749 words) - 14:17, 18 December 2021
• Glycoside Hydrolase Family 135
  ;First 3-D structure: Sph3 from ''Aspergillus clavatus'' (PDB ID [{{PDBlink}}5d6t 5d6t]) <cite>Bamford2015</cite>.
  4 KB (607 words) - 14:20, 18 December 2021
• Glycoside Hydrolase Family 32
  ...tosidase from ''Thermotoga maritima'' by X-ray crystallography (PDB ID [{{PDBlink}}1uyp 1uyp]) <cite>6</cite>
  5 KB (562 words) - 14:18, 18 December 2021
• Glycoside Hydrolase Family 158
  ...le:BuGH158.png|400px|thumb|right|'''Figure 1. Structure of BuGH158.''' ([{{PDBlink}}6PAL PDB ID 6PAL]) The TIM barrel domain is shown in cyan, the Ig-like dom
  5 KB (605 words) - 14:15, 18 December 2021
• Carbohydrate Esterase Family 9
  #Osipiuk2002 PDB entry [{{PDBlink}}3EGJ 3egj], unpublished.
  5 KB (647 words) - 14:17, 18 December 2021
• Glycoside Hydrolase Family 86
  ...t 3-D structure: The crystal structure of BpGH86A from ''B.plebeius'', ([{{PDBlink}}4aw7 PDB 4aw7]).
  4 KB (597 words) - 14:14, 18 December 2021
• Glycoside Hydrolase Family 58
  ...res here were generated in [http://www.pymol.org/ Pymol] from PDB entry [{{PDBlink}}1voe 1voe]. Each monomer is a different colour to highlight the trimeric
  5 KB (680 words) - 14:19, 18 December 2021
• Carbohydrate Binding Module Family 4
  ...ID 1GUI]) which binds &beta;1,3-glucan and the linear cleft of CfCBM4 ([{{PDBlink}}1GU3 PDB ID 1GU3]) that recognizes &beta;1,4-glucans. The conserved aromat
  10 KB (1,403 words) - 14:18, 18 December 2021
• Glycoside Hydrolase Family 54
  ...ofuranosidase B (AkAbfB) from ''Aspergillus kawachii'' IFO 4308 (PDB ID [{{PDBlink}}1wd4 1wd4] in complex with arabinose) in 2004 <cite>Miyanaga2004</cite>. T
  5 KB (638 words) - 02:38, 13 May 2014
• Carbohydrate Binding Module Family 78
  ...0px|right|'''Figure 1.''' Crystal structure of CBM78_RfGH5. ([{{PDBlink}}4V17 PDB ID 4V17]). The aromatic residues that contribute to ligand recogn
  5 KB (742 words) - 14:18, 18 December 2021
• Carbohydrate Binding Module Family 67
  ...re 1.''' The structure of ʟ-rhamnose binding pocket of SaCBM67 (PDB ID [{{PDBlink}}3w5n 3W5N]).]]
  5 KB (749 words) - 14:17, 18 December 2021
• Carbohydrate Binding Module Family 77
  ...hree-dimensional structure of ''Ruminoccocus'' CBM77_RfPL1/9 ([{{PDBlink}}5FU5 5FU5]) solved using X-ray displays a beta-sandwich fold in which the
  5 KB (759 words) - 14:14, 18 December 2021
• Glycoside Hydrolase Family 99
  ...9 endo-&alpha;-mannosidase from ''Bacteroides xylanisolvens'', PDB code [{{PDBlink}}4ad1] <cite>Thompson2012</cite>. ...bound to glucose-1,3-isofagomine and &alpha;-1,2- mannobiose, PDB code [{{PDBlink}}4ad4] <cite>Thompson2012</cite>.
  12 KB (1,654 words) - 00:27, 17 September 2022
• Glycosyltransferases
  ...e="width:50%"|Transglycosylase from ''Staphylococcus aureus'', PDB code [{{PDBlink}}2olv 2olv] <cite>Lovering2007</cite>. The complex also contains a molecule ...|Oligosaccharyltransferase STT3 from ''Pyrococcus furiosius'', PDB code [{{PDBlink}}2zai 2zai] <cite>Igura2008</cite>.
  12 KB (1,568 words) - 04:47, 7 January 2021
• Polysaccharide Lyase Family 15
  ...al structures of the substrate complex of the monomeric Atu3025 (PDB ID [{{PDBlink}}3AFL 3AFL]) with the MGG substrate in blue.]]
  5 KB (724 words) - 14:17, 18 December 2021
• Carbohydrate Binding Module Family 15
  ...|'''Figure 1.''' The fold of the CBM15 in ''C. japonicus'' Xyn10C (see [{{PDBlink}}1GNY PDB ID 1GNY]) highlighting the two perpendicular tryptophans bound to
  5 KB (801 words) - 14:19, 18 December 2021
• Glycoside Hydrolase Family 189
  .../sub> was determined at 3.8 Å by X-ray crystal structure analysis (PDB: [{{PDBlink}}8WY1 8WY1]) <cite>Tanaka2024</cite>. The overall structure comprises a sin
  6 KB (895 words) - 18:29, 24 February 2024
• Glycoside Hydrolase Family 47
  ...Three-dimensional structure of human GH47 &alpha;-mannosidase, PDB code [{{PDBlink}}1fmi] <cite>Herscovics2000</cite>. ...H47 &alpha;-mannosidase in complex with 1-deoxymannojirimycin, PDB code [{{PDBlink}}1fo2] <cite>Herscovics2000</cite>.
  14 KB (1,900 words) - 14:15, 18 December 2021
• Help:Images
  ...face representation of "GH61A" from ''Thermoascus aurantiacus'' (PDB ID [{{PDBlink}}2yet 2YET] <cite>Quinlan2011</cite>).''' A bound copper atom at the active
  7 KB (1,131 words) - 11:13, 6 August 2020
• Auxiliary Activity Family 14
  ;First 3-D structure: ''Pc''AA14B from ''P. coccineus'' [{{PDBlink}}5no7 5NO7] <cite>Couturier2018</cite>
  6 KB (793 words) - 14:17, 18 December 2021
• Glycoside Hydrolase Family 65
  ...ee-dimensional structure of ''L. brevis'' maltose phosphorylase (PDB ID [{{PDBlink}}1h54 1h54]) represents the first determined in this family <cite>Egloff200
  7 KB (917 words) - 14:18, 18 December 2021
• Glycoside Hydrolase Family 18
  ...d panel D shows details of ChiB in complex with a chito-pentamer (PDB ID[{{PDBlink}}1e6n 1e6n]). Subsites are numbered. This picture was taken from <cite>Zaka
  14 KB (1,944 words) - 14:17, 18 December 2021
• Carbohydrate Binding Module Family 22
  ...f CBM22-2 from the ''Paenibacillus barcinonensis'' xylanase Xyn10C (see [{{PDBlink}}4XUR PDB ID 4XUR]) highlighting the topography of the binding site and the
  7 KB (971 words) - 14:14, 18 December 2021
• Polysaccharide Lyase Family 7
  ...re prediction with the crystallized PL7 from ''Klabsiella pneumoniae'' ([{{PDBlink}}4OZX PDB ID 4OZX]). Conserved residues in the homologues are colored in re ...A,C) and surface structure (B,D) with superimposed tetrasaccharide from [{{PDBlink}}2ZAA PDB ID 2ZAA]. The image was conducted in PyMOL <cite>DeLano2002</cite
  13 KB (1,773 words) - 14:14, 18 December 2021
• Carbohydrate Binding Module Family 58
  ...catalytically inactive SusG D498N mutant complexed with maltoheptaose ([{{PDBlink}}3k8l PDB 3K8L]). The structure is colored blue to red from the N- to C-ter
  7 KB (978 words) - 14:15, 18 December 2021
• Carbohydrate Binding Module Family 87
  A.''' The structure of Agd3^CBM87 ([{{PDBlink}}6nwz 6NWZ])consists of three ⍺-helices (H1-H3) and a central β-sheet (i
  7 KB (1,023 words) - 14:15, 18 December 2021
• Glycoside Hydrolase Family 119
  9 KB (1,170 words) - 03:06, 26 February 2024
• Polysaccharide epimerases
  ...{{PDBlink}}2PYH PDB ID 2PYH], <cite> Rozeboom2008 </cite>) and B. AlgG ([{{PDBlink}}4NK6 PDB ID 4NK6], <cite> wolfram2014 </cite>). The maps were created usin ...n a hairpin loop away from the active site <cite> Rozeboom2008 </cite> ([{{PDBlink}}2PYH PDB ID 2PYH]). Without the calcium ion, the loop would likely change
  53 KB (7,295 words) - 14:16, 18 December 2021
• Carbohydrate-binding modules
  ...y in amino acid sequence (top) and 3D crystal structure (bottom) PDB ID [{{PDBlink}}1eut 1eut].]] ...inal family CBM6 from ''Clostridium stercorarium'' xylanase (B) (PDB ID [{{PDBlink}}1NAE 1NAE]) <cite>Boraston20032</cite> showing binding sites on the face (
  30 KB (4,139 words) - 02:52, 9 January 2023
• Auxiliary Activity Family 5
  ...residues of copper radical oxidases FgrGalOx, Cu ion in orange (PDB ID [{{PDBlink}}1gof 1GOF]). ]] ...{PDBlink}}1gof 1GOF]), Copper ion in orange and B. ''Cgr''AlcOx (PDB ID [{{PDBlink}}5c86 5C86]), Copper ion in grey. This figure is reproduced from <cite>Yin2
  27 KB (3,558 words) - 10:17, 19 April 2022
• Auxiliary Activity Family 9
  ...face representation of "GH61A" from ''Thermoascus aurantiacus'' (PDB ID [{{PDBlink}}2yet 2YET] <cite>Quinlan2011</cite>).''' A bound copper atom at the active
  15 KB (2,056 words) - 14:18, 18 December 2021